Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05714

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05713 and H281DRAFT_05714 are separated by 17 nucleotidesH281DRAFT_05714 and H281DRAFT_05715 are separated by 13 nucleotides H281DRAFT_05713: H281DRAFT_05713 - anthranilate phosphoribosyltransferase, at 131,967 to 132,998 _05713 H281DRAFT_05714: H281DRAFT_05714 - anthranilate synthase, component II, at 133,016 to 133,609 _05714 H281DRAFT_05715: H281DRAFT_05715 - anthranilate synthase, component I, at 133,623 to 135,116 _05715 Position (kb) 133 134Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 132.327 kb on - strand, within H281DRAFT_05713at 132.331 kb on + strand, within H281DRAFT_05713at 132.331 kb on + strandat 132.331 kb on + strand, within H281DRAFT_05713at 132.331 kb on + strandat 132.332 kb on - strand, within H281DRAFT_05713at 132.332 kb on - strand, within H281DRAFT_05713at 132.332 kb on - strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.726 kb on - strand, within H281DRAFT_05713at 132.867 kb on - strand, within H281DRAFT_05713at 133.138 kb on + strand, within H281DRAFT_05714at 133.139 kb on - strand, within H281DRAFT_05714at 133.525 kb on - strand, within H281DRAFT_05714at 133.557 kb on + strandat 133.557 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.587 kb on + strandat 133.587 kb on + strandat 133.588 kb on - strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.754 kb on - strandat 133.754 kb on - strandat 133.826 kb on - strand, within H281DRAFT_05715at 133.952 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strandat 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.335 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.417 kb on - strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.447 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.566 kb on + strand, within H281DRAFT_05715at 134.567 kb on - strand, within H281DRAFT_05715at 134.593 kb on + strand, within H281DRAFT_05715at 134.594 kb on - strand, within H281DRAFT_05715at 134.605 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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132,327 - H281DRAFT_05713 0.35 -2.2
132,331 + H281DRAFT_05713 0.35 -2.8
132,331 + -1.2
132,331 + H281DRAFT_05713 0.35 -4.1
132,331 + -1.5
132,332 - H281DRAFT_05713 0.35 -2.7
132,332 - H281DRAFT_05713 0.35 -3.3
132,332 - H281DRAFT_05713 0.35 -2.7
132,716 + H281DRAFT_05713 0.73 -0.9
132,716 + H281DRAFT_05713 0.73 -3.4
132,716 + H281DRAFT_05713 0.73 -4.4
132,726 - H281DRAFT_05713 0.74 -2.2
132,867 - H281DRAFT_05713 0.87 -2.9
133,138 + H281DRAFT_05714 0.21 -1.6
133,139 - H281DRAFT_05714 0.21 +0.7
133,525 - H281DRAFT_05714 0.86 -4.7
133,557 + -1.2
133,557 + -4.2
133,572 + -3.3
133,572 + -3.6
133,572 + -4.5
133,572 + -2.7
133,573 - -5.6
133,573 - -3.2
133,573 - -5.5
133,587 + -1.7
133,587 + -1.5
133,588 - -3.1
133,753 + -4.4
133,753 + -4.1
133,753 + -2.1
133,753 + -5.4
133,753 + -3.9
133,754 - -4.0
133,754 - -1.2
133,826 - H281DRAFT_05715 0.14 -2.1
133,952 + H281DRAFT_05715 0.22 -3.8
134,213 + H281DRAFT_05715 0.39 -3.6
134,213 + H281DRAFT_05715 0.39 -1.5
134,290 + H281DRAFT_05715 0.45 -3.1
134,290 + H281DRAFT_05715 0.45 -1.7
134,293 + H281DRAFT_05715 0.45 -5.4
134,293 + H281DRAFT_05715 0.45 -4.4
134,294 - H281DRAFT_05715 0.45 -3.9
134,294 - H281DRAFT_05715 0.45 -2.3
134,296 + H281DRAFT_05715 0.45 -3.8
134,296 + H281DRAFT_05715 0.45 -2.1
134,296 + H281DRAFT_05715 0.45 -4.0
134,296 + H281DRAFT_05715 0.45 -4.2
134,296 + H281DRAFT_05715 0.45 -2.5
134,296 + +1.1
134,297 - H281DRAFT_05715 0.45 -4.1
134,297 - H281DRAFT_05715 0.45 -5.4
134,297 - H281DRAFT_05715 0.45 -1.7
134,297 - H281DRAFT_05715 0.45 -3.5
134,297 - H281DRAFT_05715 0.45 -4.7
134,297 - H281DRAFT_05715 0.45 -2.5
134,297 - H281DRAFT_05715 0.45 -3.0
134,297 - H281DRAFT_05715 0.45 -4.0
134,297 - H281DRAFT_05715 0.45 -2.7
134,302 + H281DRAFT_05715 0.45 -6.0
134,302 + H281DRAFT_05715 0.45 -2.8
134,302 + H281DRAFT_05715 0.45 -2.1
134,303 - H281DRAFT_05715 0.46 -4.8
134,303 - H281DRAFT_05715 0.46 -1.1
134,335 + H281DRAFT_05715 0.48 -1.2
134,416 + H281DRAFT_05715 0.53 -4.5
134,416 + H281DRAFT_05715 0.53 -1.2
134,417 - H281DRAFT_05715 0.53 -1.1
134,446 + H281DRAFT_05715 0.55 -3.0
134,446 + H281DRAFT_05715 0.55 -5.8
134,447 - H281DRAFT_05715 0.55 -3.9
134,471 - H281DRAFT_05715 0.57 -5.9
134,471 - H281DRAFT_05715 0.57 -2.9
134,471 - H281DRAFT_05715 0.57 -4.5
134,471 - H281DRAFT_05715 0.57 -5.3
134,566 + H281DRAFT_05715 0.63 +0.1
134,567 - H281DRAFT_05715 0.63 -4.9
134,593 + H281DRAFT_05715 0.65 -2.6
134,594 - H281DRAFT_05715 0.65 -2.9
134,605 + +1.1

Or see this region's nucleotide sequence