Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01160

Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01155 and AO353_01160 are separated by 25 nucleotidesAO353_01160 and AO353_01165 are separated by 558 nucleotides AO353_01155: AO353_01155 - 3-hydroxyacyl-CoA dehydrogenase, at 254,496 to 256,640 _01155 AO353_01160: AO353_01160 - acetyl-CoA acetyltransferase, at 256,666 to 257,871 _01160 AO353_01165: AO353_01165 - cytochrome C, at 258,430 to 259,284 _01165 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 255.998 kb on + strand, within AO353_01155at 256.390 kb on + strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.559 kb on + strandat 256.559 kb on + strandat 256.559 kb on + strandat 256.560 kb on - strandat 256.560 kb on - strandat 256.560 kb on - strandat 256.640 kb on + strandat 256.640 kb on + strandat 256.640 kb on + strandat 256.641 kb on - strandat 256.816 kb on - strand, within AO353_01160at 256.816 kb on - strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.838 kb on + strandat 257.838 kb on + strandat 257.838 kb on + strandat 257.839 kb on - strandat 257.839 kb on - strandat 257.842 kb on + strandat 257.843 kb on - strandat 257.843 kb on - strandat 257.882 kb on + strandat 257.905 kb on - strandat 257.920 kb on + strandat 257.920 kb on + strandat 257.920 kb on + strandat 257.921 kb on - strandat 257.921 kb on - strandat 257.921 kb on - strandat 257.921 kb on - strandat 257.921 kb on - strandat 257.990 kb on + strandat 257.990 kb on + strandat 258.032 kb on + strandat 258.032 kb on + strandat 258.033 kb on - strandat 258.033 kb on - strandat 258.062 kb on - strandat 258.062 kb on - strandat 258.070 kb on + strandat 258.095 kb on + strandat 258.102 kb on + strandat 258.105 kb on + strandat 258.106 kb on - strandat 258.115 kb on + strandat 258.116 kb on - strandat 258.138 kb on + strandat 258.139 kb on - strandat 258.144 kb on - strandat 258.150 kb on + strandat 258.150 kb on + strandat 258.150 kb on + strandat 258.150 kb on + strandat 258.151 kb on - strandat 258.151 kb on - strandat 258.151 kb on - strandat 258.151 kb on - strandat 258.151 kb on - strandat 258.197 kb on + strandat 258.197 kb on + strandat 258.197 kb on + strandat 258.198 kb on - strandat 258.198 kb on - strandat 258.198 kb on - strandat 258.252 kb on - strandat 258.323 kb on + strandat 258.323 kb on + strandat 258.323 kb on + strandat 258.324 kb on - strandat 258.447 kb on + strandat 258.448 kb on - strandat 258.454 kb on + strandat 258.454 kb on + strandat 258.454 kb on + strandat 258.455 kb on - strandat 258.455 kb on - strandat 258.527 kb on - strand, within AO353_01165at 258.859 kb on + strand, within AO353_01165at 258.859 kb on + strand, within AO353_01165at 258.860 kb on - strand, within AO353_01165at 258.860 kb on - strand, within AO353_01165

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM
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255,998 + AO353_01155 0.70 -1.1
256,390 + AO353_01155 0.88 +1.1
256,391 - AO353_01155 0.88 +0.5
256,391 - AO353_01155 0.88 +0.3
256,391 - AO353_01155 0.88 -0.2
256,391 - AO353_01155 0.88 -0.6
256,391 - AO353_01155 0.88 -0.7
256,559 + +0.1
256,559 + -0.7
256,559 + +0.9
256,560 - +0.9
256,560 - -0.1
256,560 - +0.9
256,640 + +0.7
256,640 + -0.1
256,640 + +0.5
256,641 - -0.7
256,816 - AO353_01160 0.12 +0.9
256,816 - AO353_01160 0.12 +0.2
257,153 + AO353_01160 0.40 -0.1
257,153 + AO353_01160 0.40 +0.9
257,153 + AO353_01160 0.40 +0.9
257,154 - AO353_01160 0.40 -0.7
257,154 - AO353_01160 0.40 -0.0
257,154 - AO353_01160 0.40 -0.4
257,366 + AO353_01160 0.58 -1.1
257,366 + AO353_01160 0.58 -1.1
257,366 + AO353_01160 0.58 +0.9
257,367 - AO353_01160 0.58 -0.4
257,367 - AO353_01160 0.58 +1.2
257,367 - AO353_01160 0.58 +0.0
257,370 + AO353_01160 0.58 -0.1
257,370 + AO353_01160 0.58 +1.4
257,370 + AO353_01160 0.58 +0.7
257,370 + AO353_01160 0.58 +1.9
257,370 + AO353_01160 0.58 -3.5
257,370 + AO353_01160 0.58 +1.3
257,371 - AO353_01160 0.58 -0.0
257,371 - AO353_01160 0.58 +1.0
257,371 - AO353_01160 0.58 +1.7
257,371 - AO353_01160 0.58 -0.1
257,371 - AO353_01160 0.58 +0.6
257,838 + +0.9
257,838 + +0.5
257,838 + +1.7
257,839 - +0.9
257,839 - -1.0
257,842 + -1.1
257,843 - -0.7
257,843 - -0.7
257,882 + +0.3
257,905 - +1.0
257,920 + -0.4
257,920 + +0.5
257,920 + +1.7
257,921 - +1.7
257,921 - +0.3
257,921 - +2.4
257,921 - -0.1
257,921 - +2.4
257,990 + +0.3
257,990 + -0.3
258,032 + +0.9
258,032 + +0.9
258,033 - +0.9
258,033 - +0.9
258,062 - -0.6
258,062 - -0.4
258,070 + +0.4
258,095 + -0.5
258,102 + -0.5
258,105 + -1.8
258,106 - -0.9
258,115 + +0.6
258,116 - +0.1
258,138 + +0.4
258,139 - +0.3
258,144 - -1.3
258,150 + -1.5
258,150 + -2.1
258,150 + +0.9
258,150 + -0.1
258,151 - +0.6
258,151 - -1.6
258,151 - -0.3
258,151 - -1.3
258,151 - -1.7
258,197 + -1.4
258,197 + +0.3
258,197 + +0.9
258,198 - +0.9
258,198 - +0.3
258,198 - -0.1
258,252 - +0.4
258,323 + -1.3
258,323 + +0.9
258,323 + +0.9
258,324 - +1.0
258,447 + -1.0
258,448 - -0.5
258,454 + -1.1
258,454 + -0.5
258,454 + -0.7
258,455 - +1.3
258,455 - +0.4
258,527 - AO353_01165 0.11 -1.3
258,859 + AO353_01165 0.50 +0.3
258,859 + AO353_01165 0.50 +0.9
258,860 - AO353_01165 0.50 -0.5
258,860 - AO353_01165 0.50 -1.9

Or see this region's nucleotide sequence