Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3027 and Shewana3_3028 are separated by 179 nucleotides Shewana3_3028 and Shewana3_3029 are separated by 167 nucleotides Shewana3_3029 and Shewana3_3030 are separated by 11 nucleotides
Shewana3_3027: Shewana3_3027 - signal peptidase I (RefSeq), at 3,632,110 to 3,633,027
_3027
Shewana3_3028: Shewana3_3028 - GTP-binding protein LepA (RefSeq), at 3,633,207 to 3,634,997
_3028
Shewana3_3029: Shewana3_3029 - positive regulator of sigma(E), RseC/MucC (RefSeq), at 3,635,165 to 3,635,638
_3029
Shewana3_3030: Shewana3_3030 - sigma E regulatory protein, MucB/RseB (RefSeq), at 3,635,650 to 3,636,582
_3030
Position (kb)
3633
3634
3635 Strain fitness (log2 ratio)
-2
-1
0
1 at 3633.342 kb on - strand at 3633.496 kb on - strand, within Shewana3_3028 at 3634.001 kb on - strand, within Shewana3_3028 at 3634.001 kb on - strand, within Shewana3_3028 at 3634.056 kb on - strand, within Shewana3_3028 at 3634.533 kb on - strand, within Shewana3_3028 at 3634.638 kb on - strand, within Shewana3_3028 at 3635.910 kb on - strand, within Shewana3_3030
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 3,633,342 - -0.8 3,633,496 - Shewana3_3028 0.16 -0.7 3,634,001 - Shewana3_3028 0.44 -1.2 3,634,001 - Shewana3_3028 0.44 -2.3 3,634,056 - Shewana3_3028 0.47 -0.7 3,634,533 - Shewana3_3028 0.74 -0.7 3,634,638 - Shewana3_3028 0.80 -0.4 3,635,910 - Shewana3_3030 0.28 +0.2
Or see this region's nucleotide sequence