Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1293 and Shewana3_1294 are separated by 259 nucleotides Shewana3_1294 and Shewana3_1295 overlap by 16 nucleotides
Shewana3_1293: Shewana3_1293 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,504,135 to 1,506,138
_1293
Shewana3_1294: Shewana3_1294 - hypothetical protein (RefSeq), at 1,506,398 to 1,506,643
_1294
Shewana3_1295: Shewana3_1295 - acriflavin resistance protein (RefSeq), at 1,506,628 to 1,509,708
_1295
Position (kb)
1506
1507 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1505.443 kb on + strand, within Shewana3_1293 at 1505.492 kb on + strand, within Shewana3_1293 at 1505.492 kb on + strand, within Shewana3_1293 at 1505.561 kb on - strand, within Shewana3_1293 at 1505.651 kb on - strand, within Shewana3_1293 at 1506.084 kb on + strand at 1506.148 kb on - strand at 1506.253 kb on + strand at 1506.253 kb on + strand at 1506.253 kb on + strand at 1506.257 kb on + strand at 1506.299 kb on + strand at 1506.311 kb on + strand at 1506.347 kb on + strand at 1506.347 kb on + strand at 1506.359 kb on + strand at 1506.401 kb on - strand at 1506.504 kb on + strand, within Shewana3_1294 at 1506.654 kb on - strand at 1506.707 kb on + strand at 1506.759 kb on + strand at 1506.770 kb on + strand at 1506.876 kb on + strand at 1506.954 kb on + strand, within Shewana3_1295 at 1507.071 kb on + strand, within Shewana3_1295 at 1507.079 kb on - strand, within Shewana3_1295 at 1507.129 kb on - strand, within Shewana3_1295 at 1507.172 kb on - strand, within Shewana3_1295 at 1507.341 kb on + strand, within Shewana3_1295 at 1507.342 kb on - strand, within Shewana3_1295 at 1507.356 kb on + strand, within Shewana3_1295
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,505,443 + Shewana3_1293 0.65 -0.0 1,505,492 + Shewana3_1293 0.68 +0.4 1,505,492 + Shewana3_1293 0.68 -1.6 1,505,561 - Shewana3_1293 0.71 -0.4 1,505,651 - Shewana3_1293 0.76 +1.0 1,506,084 + +0.1 1,506,148 - +0.2 1,506,253 + +0.5 1,506,253 + -0.7 1,506,253 + -0.5 1,506,257 + -0.5 1,506,299 + +1.0 1,506,311 + -1.2 1,506,347 + -0.4 1,506,347 + +0.1 1,506,359 + +0.0 1,506,401 - +2.0 1,506,504 + Shewana3_1294 0.43 -1.3 1,506,654 - -0.3 1,506,707 + -1.8 1,506,759 + +1.2 1,506,770 + +0.2 1,506,876 + +0.1 1,506,954 + Shewana3_1295 0.11 -1.0 1,507,071 + Shewana3_1295 0.14 -0.5 1,507,079 - Shewana3_1295 0.15 +0.4 1,507,129 - Shewana3_1295 0.16 -0.8 1,507,172 - Shewana3_1295 0.18 +1.5 1,507,341 + Shewana3_1295 0.23 +0.2 1,507,342 - Shewana3_1295 0.23 -0.5 1,507,356 + Shewana3_1295 0.24 -0.3
Or see this region's nucleotide sequence