Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11170 and PS417_11175 overlap by 14 nucleotides PS417_11175 and PS417_11180 are separated by 173 nucleotides PS417_11180 and PS417_11185 overlap by 4 nucleotides
PS417_11170: PS417_11170 - aldehyde dehydrogenase, at 2,395,779 to 2,397,200
_11170
PS417_11175: PS417_11175 - AraC family transcriptional regulator, at 2,397,187 to 2,398,125
_11175
PS417_11180: PS417_11180 - TetR family transcriptional regulator, at 2,398,299 to 2,398,928
_11180
PS417_11185: PS417_11185 - dimethylallyltransferase, at 2,398,925 to 2,399,602
_11185
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-1
0
1
2 at 2396.841 kb on + strand, within PS417_11170 at 2396.842 kb on - strand, within PS417_11170 at 2396.992 kb on - strand, within PS417_11170 at 2397.137 kb on - strand at 2397.153 kb on + strand at 2397.154 kb on - strand at 2397.502 kb on + strand, within PS417_11175 at 2397.502 kb on + strand, within PS417_11175 at 2398.281 kb on - strand at 2398.397 kb on - strand, within PS417_11180 at 2398.432 kb on - strand, within PS417_11180 at 2398.437 kb on + strand, within PS417_11180 at 2398.437 kb on + strand, within PS417_11180 at 2398.438 kb on - strand, within PS417_11180 at 2398.495 kb on - strand, within PS417_11180 at 2398.908 kb on + strand at 2398.933 kb on - strand at 2398.936 kb on - strand at 2398.941 kb on + strand at 2398.942 kb on - strand at 2399.016 kb on - strand, within PS417_11185
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,396,841 + PS417_11170 0.75 -0.1 2,396,842 - PS417_11170 0.75 -0.2 2,396,992 - PS417_11170 0.85 +1.3 2,397,137 - +0.2 2,397,153 + -0.7 2,397,154 - +1.9 2,397,502 + PS417_11175 0.34 +0.5 2,397,502 + PS417_11175 0.34 +0.6 2,398,281 - -0.1 2,398,397 - PS417_11180 0.16 +0.7 2,398,432 - PS417_11180 0.21 -0.6 2,398,437 + PS417_11180 0.22 -0.3 2,398,437 + PS417_11180 0.22 +0.2 2,398,438 - PS417_11180 0.22 -1.1 2,398,495 - PS417_11180 0.31 +0.3 2,398,908 + +1.5 2,398,933 - +0.9 2,398,936 - -0.5 2,398,941 + -0.2 2,398,942 - +0.1 2,399,016 - PS417_11185 0.13 +0.4
Or see this region's nucleotide sequence