Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0825 and Shewana3_0826 are separated by 107 nucleotides Shewana3_0826 and Shewana3_0827 are separated by 149 nucleotides Shewana3_0827 and Shewana3_0828 are separated by 12 nucleotides Shewana3_0828 and Shewana3_0829 are separated by 78 nucleotides
Shewana3_0825: Shewana3_0825 - hypothetical protein (RefSeq), at 956,557 to 956,886
_0825
Shewana3_0826: Shewana3_0826 - hypothetical protein (RefSeq), at 956,994 to 957,647
_0826
Shewana3_0827: Shewana3_0827 - phage shock protein A, PspA (RefSeq), at 957,797 to 958,486
_0827
Shewana3_0828: Shewana3_0828 - hypothetical protein (RefSeq), at 958,499 to 958,912
_0828
Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724
_0829
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1 at 956.861 kb on + strand at 957.042 kb on + strand at 957.167 kb on + strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.568 kb on - strand, within Shewana3_0826 at 957.653 kb on + strand at 957.661 kb on - strand at 957.663 kb on - strand at 957.663 kb on - strand at 957.881 kb on - strand, within Shewana3_0827 at 958.002 kb on - strand at 958.366 kb on - strand, within Shewana3_0827 at 958.366 kb on - strand, within Shewana3_0827 at 958.432 kb on - strand at 958.531 kb on + strand at 958.539 kb on - strand at 958.555 kb on - strand, within Shewana3_0828 at 958.562 kb on + strand, within Shewana3_0828 at 958.622 kb on - strand, within Shewana3_0828 at 959.079 kb on - strand at 959.131 kb on + strand at 959.176 kb on + strand, within Shewana3_0829 at 959.217 kb on - strand, within Shewana3_0829 at 959.249 kb on - strand, within Shewana3_0829 at 959.263 kb on + strand, within Shewana3_0829 at 959.314 kb on - strand, within Shewana3_0829 at 959.339 kb on + strand, within Shewana3_0829 at 959.349 kb on + strand, within Shewana3_0829 at 959.428 kb on + strand, within Shewana3_0829
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 956,861 + -0.1 957,042 + -0.7 957,167 + Shewana3_0826 0.26 +0.1 957,217 - Shewana3_0826 0.34 +0.4 957,217 - Shewana3_0826 0.34 +1.1 957,217 - Shewana3_0826 0.34 -0.9 957,442 + Shewana3_0826 0.69 -1.5 957,442 + Shewana3_0826 0.69 +1.1 957,568 - Shewana3_0826 0.88 -0.7 957,653 + -0.9 957,661 - -0.4 957,663 - -0.1 957,663 - -0.0 957,881 - Shewana3_0827 0.12 +0.2 958,002 - -1.5 958,366 - Shewana3_0827 0.82 -1.6 958,366 - Shewana3_0827 0.82 -1.9 958,432 - -1.5 958,531 + +0.1 958,539 - +1.1 958,555 - Shewana3_0828 0.14 -0.7 958,562 + Shewana3_0828 0.15 +1.1 958,622 - Shewana3_0828 0.30 -0.2 959,079 - -0.4 959,131 + +1.5 959,176 + Shewana3_0829 0.11 +0.3 959,217 - Shewana3_0829 0.13 -1.0 959,249 - Shewana3_0829 0.15 -0.2 959,263 + Shewana3_0829 0.16 -1.3 959,314 - Shewana3_0829 0.19 +0.1 959,339 + Shewana3_0829 0.20 -0.4 959,349 + Shewana3_0829 0.21 +0.2 959,428 + Shewana3_0829 0.25 +0.3
Or see this region's nucleotide sequence