Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0546 and Shewana3_0547 are separated by 289 nucleotides Shewana3_0547 and Shewana3_0548 are separated by 146 nucleotides
Shewana3_0546: Shewana3_0546 - hypothetical protein (RefSeq), at 641,818 to 642,510
_0546
Shewana3_0547: Shewana3_0547 - histone family protein DNA-binding protein (RefSeq), at 642,800 to 643,072
_0547
Shewana3_0548: Shewana3_0548 - no description, at 643,219 to 644,016
_0548
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1 at 642.001 kb on + strand, within Shewana3_0546 at 642.192 kb on + strand, within Shewana3_0546 at 642.216 kb on + strand, within Shewana3_0546 at 642.258 kb on - strand, within Shewana3_0546 at 642.260 kb on + strand, within Shewana3_0546 at 642.260 kb on + strand, within Shewana3_0546 at 642.266 kb on + strand, within Shewana3_0546 at 642.358 kb on + strand, within Shewana3_0546 at 642.522 kb on + strand at 642.564 kb on + strand at 642.831 kb on + strand, within Shewana3_0547 at 642.859 kb on - strand, within Shewana3_0547 at 643.065 kb on - strand at 643.124 kb on + strand at 643.280 kb on - strand at 643.280 kb on - strand at 643.300 kb on - strand, within Shewana3_0548 at 643.388 kb on + strand, within Shewana3_0548 at 643.406 kb on - strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.709 kb on - strand, within Shewana3_0548 at 643.944 kb on - strand at 644.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 642,001 + Shewana3_0546 0.26 +0.1 642,192 + Shewana3_0546 0.54 -0.5 642,216 + Shewana3_0546 0.57 +0.4 642,258 - Shewana3_0546 0.63 -0.1 642,260 + Shewana3_0546 0.64 +0.1 642,260 + Shewana3_0546 0.64 +0.4 642,266 + Shewana3_0546 0.65 -0.0 642,358 + Shewana3_0546 0.78 -0.3 642,522 + -0.3 642,564 + +0.0 642,831 + Shewana3_0547 0.11 +0.0 642,859 - Shewana3_0547 0.22 -1.4 643,065 - -0.7 643,124 + -2.2 643,280 - -0.1 643,280 - -0.3 643,300 - Shewana3_0548 0.10 +0.2 643,388 + Shewana3_0548 0.21 +0.3 643,406 - Shewana3_0548 0.23 -0.1 643,602 + Shewana3_0548 0.48 -0.3 643,602 + Shewana3_0548 0.48 -0.0 643,709 - Shewana3_0548 0.61 -0.2 643,944 - +0.4 644,047 + +0.1
Or see this region's nucleotide sequence