Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Shewana3_0149 are separated by 36 nucleotides Shewana3_0149 and Shewana3_0150 are separated by 251 nucleotides Shewana3_0150 and Shewana3_0151 are separated by 24 nucleotides
Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365
hslO
Shewana3_0149: Shewana3_0149 - RNA-binding S4 domain-containing protein (RefSeq), at 173,402 to 173,800
_0149
Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978
_0150
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Position (kb)
174
175 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 173.092 kb on + strand, within hslO at 173.100 kb on - strand, within hslO at 173.151 kb on + strand, within hslO at 173.615 kb on + strand, within Shewana3_0149 at 173.771 kb on - strand at 173.790 kb on - strand at 173.961 kb on - strand at 174.039 kb on - strand at 174.081 kb on + strand at 174.272 kb on + strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.465 kb on + strand, within Shewana3_0150 at 174.473 kb on - strand, within Shewana3_0150 at 174.561 kb on + strand, within Shewana3_0150 at 174.564 kb on - strand, within Shewana3_0150 at 174.694 kb on + strand, within Shewana3_0150 at 174.701 kb on - strand, within Shewana3_0150 at 174.800 kb on + strand, within Shewana3_0150 at 175.055 kb on + strand at 175.103 kb on + strand at 175.169 kb on + strand at 175.208 kb on + strand at 175.208 kb on + strand at 175.216 kb on - strand, within Shewana3_0151 at 175.216 kb on - strand, within Shewana3_0151 at 175.231 kb on - strand, within Shewana3_0151 at 175.264 kb on + strand, within Shewana3_0151 at 175.272 kb on - strand, within Shewana3_0151 at 175.369 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.493 kb on - strand, within Shewana3_0151 at 175.589 kb on + strand, within Shewana3_0151 at 175.794 kb on + strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.811 kb on - strand, within Shewana3_0151 at 175.953 kb on + strand, within Shewana3_0151
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 173,092 + hslO Shewana3_0148 0.68 -0.1 173,100 - hslO Shewana3_0148 0.69 -0.8 173,151 + hslO Shewana3_0148 0.75 -0.1 173,615 + Shewana3_0149 0.53 +0.4 173,771 - -0.2 173,790 - -0.1 173,961 - +0.1 174,039 - -1.1 174,081 + -1.3 174,272 + Shewana3_0150 0.24 -3.0 174,335 - Shewana3_0150 0.31 -2.0 174,335 - Shewana3_0150 0.31 -3.4 174,465 + Shewana3_0150 0.45 -2.2 174,473 - Shewana3_0150 0.45 -1.0 174,561 + Shewana3_0150 0.55 -2.3 174,564 - Shewana3_0150 0.55 -3.0 174,694 + Shewana3_0150 0.69 -0.2 174,701 - Shewana3_0150 0.70 -1.9 174,800 + Shewana3_0150 0.81 -0.2 175,055 + -2.0 175,103 + -0.8 175,169 + -2.6 175,208 + -2.3 175,208 + -2.8 175,216 - Shewana3_0151 0.10 -1.2 175,216 - Shewana3_0151 0.10 -1.0 175,231 - Shewana3_0151 0.11 -2.4 175,264 + Shewana3_0151 0.12 -2.8 175,272 - Shewana3_0151 0.13 +0.4 175,369 + Shewana3_0151 0.17 -2.6 175,407 + Shewana3_0151 0.19 -2.2 175,407 + Shewana3_0151 0.19 -2.1 175,407 + Shewana3_0151 0.19 -2.1 175,415 - Shewana3_0151 0.20 -2.9 175,415 - Shewana3_0151 0.20 -2.6 175,415 - Shewana3_0151 0.20 -1.3 175,493 - Shewana3_0151 0.23 -2.0 175,589 + Shewana3_0151 0.28 -2.2 175,794 + Shewana3_0151 0.38 -2.5 175,802 - Shewana3_0151 0.38 -2.7 175,802 - Shewana3_0151 0.38 -2.7 175,811 - Shewana3_0151 0.38 -1.8 175,953 + Shewana3_0151 0.45 -3.9
Or see this region's nucleotide sequence