Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5875 and Pf1N1B4_5876 overlap by 4 nucleotides Pf1N1B4_5876 and Pf1N1B4_5877 are separated by 332 nucleotides Pf1N1B4_5877 and Pf1N1B4_5878 are separated by 86 nucleotides Pf1N1B4_5878 and Pf1N1B4_5879 are separated by 10 nucleotides Pf1N1B4_5879 and Pf1N1B4_5880 are separated by 163 nucleotides
Pf1N1B4_5875 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 317,897 to 318,244
_5875
Pf1N1B4_5876 - hypothetical protein, at 318,241 to 318,507
_5876
Pf1N1B4_5877 - FIG00967533: hypothetical protein, at 318,840 to 319,424
_5877
Pf1N1B4_5878 - hypothetical protein, at 319,511 to 319,684
_5878
Pf1N1B4_5879 - hypothetical protein, at 319,695 to 319,937
_5879
Pf1N1B4_5880 - AttH component of AttEFGH ABC transport system, at 320,101 to 321,174
_5880
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 318.048 kb on + strand, within Pf1N1B4_5875 at 318.250 kb on + strand at 318.550 kb on + strand at 318.551 kb on - strand at 318.602 kb on - strand at 318.694 kb on - strand at 318.748 kb on - strand at 318.795 kb on + strand at 318.796 kb on - strand at 318.798 kb on - strand at 318.824 kb on + strand at 318.825 kb on - strand at 318.829 kb on - strand at 318.835 kb on - strand at 318.835 kb on - strand at 318.835 kb on - strand at 318.880 kb on + strand at 318.880 kb on + strand at 318.880 kb on + strand at 318.880 kb on + strand at 318.881 kb on - strand at 319.036 kb on - strand, within Pf1N1B4_5877 at 319.036 kb on - strand, within Pf1N1B4_5877 at 319.036 kb on - strand, within Pf1N1B4_5877 at 319.097 kb on + strand at 319.144 kb on + strand, within Pf1N1B4_5877 at 319.230 kb on + strand, within Pf1N1B4_5877 at 319.230 kb on + strand, within Pf1N1B4_5877 at 319.230 kb on + strand, within Pf1N1B4_5877 at 319.231 kb on - strand, within Pf1N1B4_5877 at 319.424 kb on + strand at 319.425 kb on - strand at 319.431 kb on + strand at 319.467 kb on + strand at 319.501 kb on + strand at 319.502 kb on - strand at 319.502 kb on - strand at 319.502 kb on - strand at 319.833 kb on + strand, within Pf1N1B4_5879 at 319.957 kb on + strand at 319.958 kb on - strand at 320.010 kb on - strand at 320.059 kb on - strand at 320.079 kb on + strand at 320.079 kb on + strand at 320.080 kb on - strand at 320.102 kb on + strand at 320.103 kb on - strand at 320.103 kb on - strand at 320.124 kb on - strand at 320.372 kb on + strand, within Pf1N1B4_5880
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 318,048 + Pf1N1B4_5875 0.43 -2.4 318,250 + -1.4 318,550 + -0.1 318,551 - -0.1 318,602 - -1.1 318,694 - -2.1 318,748 - -1.7 318,795 + +3.1 318,796 - +1.5 318,798 - -0.7 318,824 + -1.1 318,825 - -0.8 318,829 - +2.5 318,835 - +0.2 318,835 - -0.1 318,835 - +0.9 318,880 + +0.9 318,880 + -0.5 318,880 + +0.2 318,880 + +0.5 318,881 - +0.3 319,036 - Pf1N1B4_5877 0.34 -2.1 319,036 - Pf1N1B4_5877 0.34 +0.3 319,036 - Pf1N1B4_5877 0.34 -2.4 319,097 + -0.1 319,144 + Pf1N1B4_5877 0.52 -1.1 319,230 + Pf1N1B4_5877 0.67 -0.4 319,230 + Pf1N1B4_5877 0.67 -2.4 319,230 + Pf1N1B4_5877 0.67 +0.5 319,231 - Pf1N1B4_5877 0.67 -2.1 319,424 + -2.1 319,425 - -0.8 319,431 + +0.6 319,467 + +0.3 319,501 + +1.5 319,502 - -0.9 319,502 - -1.4 319,502 - -0.1 319,833 + Pf1N1B4_5879 0.57 -0.1 319,957 + -1.1 319,958 - -0.1 320,010 - -0.1 320,059 - +0.9 320,079 + +0.3 320,079 + +1.2 320,080 - -1.1 320,102 + -1.1 320,103 - -1.1 320,103 - -1.1 320,124 - +0.8 320,372 + Pf1N1B4_5880 0.25 -0.8
Or see this region's nucleotide sequence