Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1591

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1589 and Pf1N1B4_1590 are separated by 23 nucleotidesPf1N1B4_1590 and Pf1N1B4_1591 are separated by 107 nucleotidesPf1N1B4_1591 and Pf1N1B4_1592 are separated by 118 nucleotidesPf1N1B4_1592 and Pf1N1B4_1593 are separated by 33 nucleotides Pf1N1B4_1589 - Conserved hypothetical protein (perhaps related to histidine degradation), at 1,830,817 to 1,831,386 _1589 Pf1N1B4_1590 - Histidine utilization repressor, at 1,831,410 to 1,832,171 _1590 Pf1N1B4_1591 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 1,832,279 to 1,833,643 _1591 Pf1N1B4_1592 - Outer membrane lipoprotein Blc, at 1,833,762 to 1,834,331 _1592 Pf1N1B4_1593 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,834,365 to 1,834,619 _1593 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1831.345 kb on - strandat 1831.397 kb on + strandat 1831.397 kb on + strandat 1831.397 kb on + strandat 1831.397 kb on + strandat 1831.398 kb on - strandat 1831.398 kb on - strandat 1831.401 kb on + strandat 1831.401 kb on + strandat 1831.402 kb on - strandat 1831.402 kb on - strandat 1831.402 kb on - strandat 1831.411 kb on + strandat 1831.411 kb on + strandat 1831.411 kb on + strandat 1831.411 kb on + strandat 1831.411 kb on + strandat 1831.411 kb on + strandat 1831.412 kb on - strandat 1831.412 kb on - strandat 1831.412 kb on - strandat 1831.621 kb on + strand, within Pf1N1B4_1590at 1831.621 kb on + strand, within Pf1N1B4_1590at 1831.621 kb on + strand, within Pf1N1B4_1590at 1831.622 kb on - strand, within Pf1N1B4_1590at 1831.622 kb on - strand, within Pf1N1B4_1590at 1831.622 kb on - strand, within Pf1N1B4_1590at 1831.622 kb on - strand, within Pf1N1B4_1590at 1831.627 kb on + strand, within Pf1N1B4_1590at 1831.627 kb on + strand, within Pf1N1B4_1590at 1831.627 kb on + strand, within Pf1N1B4_1590at 1831.627 kb on + strand, within Pf1N1B4_1590at 1831.628 kb on - strand, within Pf1N1B4_1590at 1831.628 kb on - strand, within Pf1N1B4_1590at 1831.660 kb on + strand, within Pf1N1B4_1590at 1831.660 kb on + strand, within Pf1N1B4_1590at 1831.660 kb on + strand, within Pf1N1B4_1590at 1831.661 kb on - strand, within Pf1N1B4_1590at 1831.661 kb on - strand, within Pf1N1B4_1590at 1831.713 kb on - strand, within Pf1N1B4_1590at 1831.916 kb on + strand, within Pf1N1B4_1590at 1831.916 kb on + strand, within Pf1N1B4_1590at 1831.916 kb on + strand, within Pf1N1B4_1590at 1831.917 kb on - strand, within Pf1N1B4_1590at 1832.095 kb on + strandat 1832.095 kb on + strandat 1832.095 kb on + strandat 1832.095 kb on + strandat 1832.095 kb on + strandat 1832.096 kb on - strandat 1832.096 kb on - strandat 1832.096 kb on - strandat 1832.096 kb on - strandat 1832.203 kb on + strandat 1832.203 kb on + strandat 1832.203 kb on + strandat 1832.203 kb on + strandat 1832.203 kb on + strandat 1832.204 kb on - strandat 1832.239 kb on + strandat 1832.239 kb on + strandat 1832.239 kb on + strandat 1832.239 kb on + strandat 1832.240 kb on - strandat 1832.240 kb on - strandat 1832.240 kb on - strandat 1832.240 kb on - strandat 1832.240 kb on - strandat 1832.240 kb on - strandat 1832.241 kb on + strandat 1832.241 kb on + strandat 1832.242 kb on - strandat 1832.242 kb on - strandat 1832.245 kb on + strandat 1832.245 kb on + strandat 1832.245 kb on + strandat 1832.245 kb on + strandat 1832.245 kb on + strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.246 kb on - strandat 1832.248 kb on - strandat 1832.248 kb on - strandat 1832.314 kb on + strandat 1832.334 kb on + strandat 1832.334 kb on + strandat 1832.334 kb on + strandat 1832.335 kb on - strandat 1832.335 kb on - strandat 1832.335 kb on - strandat 1832.335 kb on - strandat 1832.335 kb on - strandat 1832.591 kb on + strand, within Pf1N1B4_1591at 1832.592 kb on - strand, within Pf1N1B4_1591at 1832.592 kb on - strand, within Pf1N1B4_1591at 1832.592 kb on - strand, within Pf1N1B4_1591at 1832.592 kb on - strand, within Pf1N1B4_1591at 1832.592 kb on - strand, within Pf1N1B4_1591at 1832.639 kb on + strand, within Pf1N1B4_1591at 1832.639 kb on + strand, within Pf1N1B4_1591at 1832.639 kb on + strand, within Pf1N1B4_1591at 1832.639 kb on + strand, within Pf1N1B4_1591at 1832.640 kb on - strand, within Pf1N1B4_1591at 1832.640 kb on - strand, within Pf1N1B4_1591at 1832.640 kb on - strand, within Pf1N1B4_1591at 1832.640 kb on - strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.643 kb on + strand, within Pf1N1B4_1591at 1832.644 kb on - strand, within Pf1N1B4_1591at 1832.644 kb on - strand, within Pf1N1B4_1591at 1832.644 kb on - strand, within Pf1N1B4_1591at 1832.753 kb on + strand, within Pf1N1B4_1591at 1832.753 kb on + strand, within Pf1N1B4_1591at 1832.753 kb on + strand, within Pf1N1B4_1591at 1832.754 kb on - strand, within Pf1N1B4_1591at 1832.754 kb on - strand, within Pf1N1B4_1591at 1832.754 kb on - strand, within Pf1N1B4_1591at 1832.807 kb on - strand, within Pf1N1B4_1591at 1832.825 kb on + strand, within Pf1N1B4_1591at 1832.826 kb on - strand, within Pf1N1B4_1591at 1832.826 kb on - strand, within Pf1N1B4_1591at 1833.047 kb on + strand, within Pf1N1B4_1591at 1833.048 kb on - strand, within Pf1N1B4_1591at 1833.150 kb on + strand, within Pf1N1B4_1591at 1833.150 kb on + strand, within Pf1N1B4_1591at 1833.150 kb on + strand, within Pf1N1B4_1591at 1833.150 kb on + strand, within Pf1N1B4_1591at 1833.151 kb on - strand, within Pf1N1B4_1591at 1833.151 kb on - strand, within Pf1N1B4_1591at 1833.151 kb on - strand, within Pf1N1B4_1591at 1833.151 kb on - strand, within Pf1N1B4_1591at 1833.326 kb on + strand, within Pf1N1B4_1591at 1833.326 kb on + strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.327 kb on - strand, within Pf1N1B4_1591at 1833.362 kb on + strand, within Pf1N1B4_1591at 1833.362 kb on + strand, within Pf1N1B4_1591at 1833.362 kb on + strand, within Pf1N1B4_1591at 1833.362 kb on + strand, within Pf1N1B4_1591at 1833.363 kb on - strand, within Pf1N1B4_1591at 1833.467 kb on + strand, within Pf1N1B4_1591at 1833.467 kb on + strand, within Pf1N1B4_1591at 1833.601 kb on + strandat 1833.602 kb on - strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.746 kb on - strandat 1833.763 kb on + strandat 1833.763 kb on + strandat 1833.763 kb on + strandat 1833.764 kb on - strandat 1833.764 kb on - strandat 1833.764 kb on - strandat 1833.764 kb on - strandat 1833.789 kb on - strandat 1833.940 kb on + strand, within Pf1N1B4_1592at 1833.940 kb on + strand, within Pf1N1B4_1592at 1833.940 kb on + strand, within Pf1N1B4_1592at 1833.940 kb on + strand, within Pf1N1B4_1592at 1833.941 kb on - strand, within Pf1N1B4_1592at 1833.941 kb on - strand, within Pf1N1B4_1592at 1833.941 kb on - strand, within Pf1N1B4_1592at 1833.941 kb on - strand, within Pf1N1B4_1592at 1833.955 kb on + strand, within Pf1N1B4_1592at 1833.955 kb on + strand, within Pf1N1B4_1592at 1833.955 kb on + strand, within Pf1N1B4_1592at 1833.956 kb on - strand, within Pf1N1B4_1592at 1833.956 kb on - strand, within Pf1N1B4_1592at 1833.956 kb on - strand, within Pf1N1B4_1592at 1833.956 kb on - strand, within Pf1N1B4_1592at 1833.967 kb on + strand, within Pf1N1B4_1592at 1833.968 kb on - strand, within Pf1N1B4_1592at 1833.968 kb on - strand, within Pf1N1B4_1592at 1833.968 kb on - strand, within Pf1N1B4_1592at 1834.057 kb on + strandat 1834.144 kb on + strand, within Pf1N1B4_1592at 1834.145 kb on - strand, within Pf1N1B4_1592at 1834.145 kb on - strand, within Pf1N1B4_1592at 1834.180 kb on + strand, within Pf1N1B4_1592at 1834.180 kb on + strand, within Pf1N1B4_1592at 1834.180 kb on + strand, within Pf1N1B4_1592at 1834.181 kb on - strand, within Pf1N1B4_1592at 1834.266 kb on + strand, within Pf1N1B4_1592at 1834.267 kb on - strand, within Pf1N1B4_1592at 1834.267 kb on - strand, within Pf1N1B4_1592at 1834.267 kb on - strand, within Pf1N1B4_1592at 1834.312 kb on - strandat 1834.333 kb on - strandat 1834.355 kb on + strandat 1834.411 kb on + strand, within Pf1N1B4_1593at 1834.411 kb on + strand, within Pf1N1B4_1593at 1834.411 kb on + strand, within Pf1N1B4_1593at 1834.412 kb on - strand, within Pf1N1B4_1593at 1834.425 kb on - strand, within Pf1N1B4_1593at 1834.604 kb on + strandat 1834.604 kb on + strandat 1834.624 kb on + strandat 1834.624 kb on + strandat 1834.624 kb on + strandat 1834.625 kb on - strandat 1834.625 kb on - strandat 1834.625 kb on - strandat 1834.625 kb on - strandat 1834.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,831,345 - -0.9
1,831,397 + -3.6
1,831,397 + -1.5
1,831,397 + +0.1
1,831,397 + -2.3
1,831,398 - +0.1
1,831,398 - -0.3
1,831,401 + -0.3
1,831,401 + -2.5
1,831,402 - -1.5
1,831,402 - +0.4
1,831,402 - -0.2
1,831,411 + -2.9
1,831,411 + -3.1
1,831,411 + -0.9
1,831,411 + +0.1
1,831,411 + -2.9
1,831,411 + -1.5
1,831,412 - +0.1
1,831,412 - +0.7
1,831,412 - +0.1
1,831,621 + Pf1N1B4_1590 0.28 -0.3
1,831,621 + Pf1N1B4_1590 0.28 -0.7
1,831,621 + Pf1N1B4_1590 0.28 -0.7
1,831,622 - Pf1N1B4_1590 0.28 +2.5
1,831,622 - Pf1N1B4_1590 0.28 +2.2
1,831,622 - Pf1N1B4_1590 0.28 +3.4
1,831,622 - Pf1N1B4_1590 0.28 +1.7
1,831,627 + Pf1N1B4_1590 0.28 -0.5
1,831,627 + Pf1N1B4_1590 0.28 -1.7
1,831,627 + Pf1N1B4_1590 0.28 +0.7
1,831,627 + Pf1N1B4_1590 0.28 -1.7
1,831,628 - Pf1N1B4_1590 0.29 +2.9
1,831,628 - Pf1N1B4_1590 0.29 +1.7
1,831,660 + Pf1N1B4_1590 0.33 -1.5
1,831,660 + Pf1N1B4_1590 0.33 -1.1
1,831,660 + Pf1N1B4_1590 0.33 -0.9
1,831,661 - Pf1N1B4_1590 0.33 +2.5
1,831,661 - Pf1N1B4_1590 0.33 +2.7
1,831,713 - Pf1N1B4_1590 0.40 +3.0
1,831,916 + Pf1N1B4_1590 0.66 -2.3
1,831,916 + Pf1N1B4_1590 0.66 +0.1
1,831,916 + Pf1N1B4_1590 0.66 +0.1
1,831,917 - Pf1N1B4_1590 0.67 +2.3
1,832,095 + -1.5
1,832,095 + -1.7
1,832,095 + +0.1
1,832,095 + -1.3
1,832,095 + -2.5
1,832,096 - +0.2
1,832,096 - -0.7
1,832,096 - -1.5
1,832,096 - +0.5
1,832,203 + -0.9
1,832,203 + -1.7
1,832,203 + +1.1
1,832,203 + -1.2
1,832,203 + -0.7
1,832,204 - -0.9
1,832,239 + -4.2
1,832,239 + -1.5
1,832,239 + -2.1
1,832,239 + -1.7
1,832,240 - -1.5
1,832,240 - -2.7
1,832,240 - -0.9
1,832,240 - -1.7
1,832,240 - +0.1
1,832,240 - -2.1
1,832,241 + -2.5
1,832,241 + -0.5
1,832,242 - -0.9
1,832,242 - -0.9
1,832,245 + -3.6
1,832,245 + -0.5
1,832,245 + -0.5
1,832,245 + -5.1
1,832,245 + -1.9
1,832,246 - -2.3
1,832,246 - -1.5
1,832,246 - -1.5
1,832,246 - -3.6
1,832,246 - -0.3
1,832,246 - -2.1
1,832,246 - -1.2
1,832,248 - -3.1
1,832,248 - +0.1
1,832,314 + -3.8
1,832,334 + -1.5
1,832,334 + -2.5
1,832,334 + -1.5
1,832,335 - -1.5
1,832,335 - -1.7
1,832,335 - -2.5
1,832,335 - -2.7
1,832,335 - -2.5
1,832,591 + Pf1N1B4_1591 0.23 -1.5
1,832,592 - Pf1N1B4_1591 0.23 -2.9
1,832,592 - Pf1N1B4_1591 0.23 -4.5
1,832,592 - Pf1N1B4_1591 0.23 -3.7
1,832,592 - Pf1N1B4_1591 0.23 +0.1
1,832,592 - Pf1N1B4_1591 0.23 -1.9
1,832,639 + Pf1N1B4_1591 0.26 -1.5
1,832,639 + Pf1N1B4_1591 0.26 -2.9
1,832,639 + Pf1N1B4_1591 0.26 -1.9
1,832,639 + Pf1N1B4_1591 0.26 -0.8
1,832,640 - Pf1N1B4_1591 0.26 -1.9
1,832,640 - Pf1N1B4_1591 0.26 -3.1
1,832,640 - Pf1N1B4_1591 0.26 -3.8
1,832,640 - Pf1N1B4_1591 0.26 -0.9
1,832,643 + Pf1N1B4_1591 0.27 -3.1
1,832,643 + Pf1N1B4_1591 0.27 -2.7
1,832,643 + Pf1N1B4_1591 0.27 -0.9
1,832,643 + Pf1N1B4_1591 0.27 -3.4
1,832,643 + Pf1N1B4_1591 0.27 -0.9
1,832,643 + Pf1N1B4_1591 0.27 -1.5
1,832,644 - Pf1N1B4_1591 0.27 -0.9
1,832,644 - Pf1N1B4_1591 0.27 -0.9
1,832,644 - Pf1N1B4_1591 0.27 +0.1
1,832,753 + Pf1N1B4_1591 0.35 -3.1
1,832,753 + Pf1N1B4_1591 0.35 -3.3
1,832,753 + Pf1N1B4_1591 0.35 -1.9
1,832,754 - Pf1N1B4_1591 0.35 +0.1
1,832,754 - Pf1N1B4_1591 0.35 +0.1
1,832,754 - Pf1N1B4_1591 0.35 -0.9
1,832,807 - Pf1N1B4_1591 0.39 -2.7
1,832,825 + Pf1N1B4_1591 0.40 -0.7
1,832,826 - Pf1N1B4_1591 0.40 -2.3
1,832,826 - Pf1N1B4_1591 0.40 -2.6
1,833,047 + Pf1N1B4_1591 0.56 -0.9
1,833,048 - Pf1N1B4_1591 0.56 -3.1
1,833,150 + Pf1N1B4_1591 0.64 -3.1
1,833,150 + Pf1N1B4_1591 0.64 -1.9
1,833,150 + Pf1N1B4_1591 0.64 -2.5
1,833,150 + Pf1N1B4_1591 0.64 +1.1
1,833,151 - Pf1N1B4_1591 0.64 -1.9
1,833,151 - Pf1N1B4_1591 0.64 +0.1
1,833,151 - Pf1N1B4_1591 0.64 -1.9
1,833,151 - Pf1N1B4_1591 0.64 -2.5
1,833,326 + Pf1N1B4_1591 0.77 +1.1
1,833,326 + Pf1N1B4_1591 0.77 -1.5
1,833,327 - Pf1N1B4_1591 0.77 -1.9
1,833,327 - Pf1N1B4_1591 0.77 -0.9
1,833,327 - Pf1N1B4_1591 0.77 +1.1
1,833,327 - Pf1N1B4_1591 0.77 -0.9
1,833,327 - Pf1N1B4_1591 0.77 -0.9
1,833,327 - Pf1N1B4_1591 0.77 -2.3
1,833,362 + Pf1N1B4_1591 0.79 -1.5
1,833,362 + Pf1N1B4_1591 0.79 -2.3
1,833,362 + Pf1N1B4_1591 0.79 -0.9
1,833,362 + Pf1N1B4_1591 0.79 -2.3
1,833,363 - Pf1N1B4_1591 0.79 -2.3
1,833,467 + Pf1N1B4_1591 0.87 -2.3
1,833,467 + Pf1N1B4_1591 0.87 -0.5
1,833,601 + -2.9
1,833,602 - +0.1
1,833,745 + +0.5
1,833,745 + +0.5
1,833,745 + -0.5
1,833,745 + -0.2
1,833,745 + -0.5
1,833,746 - +2.1
1,833,746 - +0.1
1,833,746 - +0.1
1,833,746 - +1.1
1,833,746 - +0.7
1,833,746 - -0.3
1,833,746 - -0.9
1,833,746 - +1.1
1,833,763 + -1.0
1,833,763 + +0.1
1,833,763 + -0.9
1,833,764 - +0.1
1,833,764 - -0.9
1,833,764 - +1.1
1,833,764 - +1.1
1,833,789 - -0.8
1,833,940 + Pf1N1B4_1592 0.31 +0.4
1,833,940 + Pf1N1B4_1592 0.31 -0.9
1,833,940 + Pf1N1B4_1592 0.31 -1.5
1,833,940 + Pf1N1B4_1592 0.31 +0.4
1,833,941 - Pf1N1B4_1592 0.31 +0.9
1,833,941 - Pf1N1B4_1592 0.31 +0.1
1,833,941 - Pf1N1B4_1592 0.31 +0.9
1,833,941 - Pf1N1B4_1592 0.31 +0.1
1,833,955 + Pf1N1B4_1592 0.34 +0.1
1,833,955 + Pf1N1B4_1592 0.34 -0.7
1,833,955 + Pf1N1B4_1592 0.34 +1.2
1,833,956 - Pf1N1B4_1592 0.34 +0.9
1,833,956 - Pf1N1B4_1592 0.34 -0.1
1,833,956 - Pf1N1B4_1592 0.34 -0.5
1,833,956 - Pf1N1B4_1592 0.34 +0.1
1,833,967 + Pf1N1B4_1592 0.36 -0.3
1,833,968 - Pf1N1B4_1592 0.36 +1.6
1,833,968 - Pf1N1B4_1592 0.36 +0.1
1,833,968 - Pf1N1B4_1592 0.36 -0.3
1,834,057 + +1.7
1,834,144 + Pf1N1B4_1592 0.67 +0.1
1,834,145 - Pf1N1B4_1592 0.67 +0.1
1,834,145 - Pf1N1B4_1592 0.67 -1.5
1,834,180 + Pf1N1B4_1592 0.73 -1.6
1,834,180 + Pf1N1B4_1592 0.73 -1.3
1,834,180 + Pf1N1B4_1592 0.73 +0.4
1,834,181 - Pf1N1B4_1592 0.74 -0.3
1,834,266 + Pf1N1B4_1592 0.88 +0.7
1,834,267 - Pf1N1B4_1592 0.89 -1.1
1,834,267 - Pf1N1B4_1592 0.89 +1.3
1,834,267 - Pf1N1B4_1592 0.89 +0.1
1,834,312 - +0.1
1,834,333 - +0.7
1,834,355 + -1.2
1,834,411 + Pf1N1B4_1593 0.18 +0.1
1,834,411 + Pf1N1B4_1593 0.18 -1.9
1,834,411 + Pf1N1B4_1593 0.18 -0.7
1,834,412 - Pf1N1B4_1593 0.18 +0.2
1,834,425 - Pf1N1B4_1593 0.24 +0.1
1,834,604 + +0.3
1,834,604 + -1.3
1,834,624 + -2.1
1,834,624 + -1.5
1,834,624 + -1.5
1,834,625 - +1.8
1,834,625 - -0.7
1,834,625 - +0.7
1,834,625 - -0.5
1,834,625 - +1.1

Or see this region's nucleotide sequence