Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0799 and cpcT are separated by 64 nucleotides cpcT and sodB are separated by 74 nucleotides sodB and Synpcc7942_0802 are separated by 104 nucleotides
Synpcc7942_0799: Synpcc7942_0799 - Elongator protein 3, at 792,810 to 794,390
_0799
Synpcc7942_0800: cpcT - hypothetical protein, at 794,455 to 795,048
cpcT
Synpcc7942_0801: sodB - Superoxide dismutase, at 795,123 to 795,812
sodB
Synpcc7942_0802: Synpcc7942_0802 - allophycocyanin alpha chain-like, at 795,917 to 796,504
_0802
Position (kb)
794
795
796 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 794.380 kb on + strand at 794.380 kb on + strand at 794.388 kb on - strand at 794.416 kb on - strand at 794.452 kb on + strand at 794.452 kb on + strand at 794.454 kb on + strand at 794.454 kb on + strand at 794.462 kb on - strand at 794.467 kb on - strand at 794.522 kb on + strand, within cpcT at 794.734 kb on + strand, within cpcT at 794.977 kb on + strand, within cpcT at 795.043 kb on + strand at 795.047 kb on + strand at 795.051 kb on - strand at 795.057 kb on + strand at 795.060 kb on - strand at 795.066 kb on - strand at 795.080 kb on + strand at 795.088 kb on - strand at 795.112 kb on - strand at 795.121 kb on - strand at 795.126 kb on - strand at 795.132 kb on + strand at 795.142 kb on + strand at 795.145 kb on - strand at 795.150 kb on - strand at 795.163 kb on + strand at 795.196 kb on - strand, within sodB at 795.788 kb on + strand at 795.808 kb on + strand at 795.825 kb on - strand at 795.830 kb on - strand at 795.840 kb on - strand at 795.846 kb on + strand at 795.887 kb on - strand at 795.887 kb on - strand at 795.944 kb on + strand at 795.952 kb on - strand at 795.980 kb on + strand, within Synpcc7942_0802 at 796.014 kb on - strand, within Synpcc7942_0802 at 796.015 kb on + strand, within Synpcc7942_0802
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 794,380 + +0.6 794,380 + -0.6 794,388 - +0.8 794,416 - -0.2 794,452 + -2.7 794,452 + +0.2 794,454 + +0.3 794,454 + -0.2 794,462 - +0.4 794,467 - +0.1 794,522 + cpcT Synpcc7942_0800 0.11 -0.2 794,734 + cpcT Synpcc7942_0800 0.47 -1.7 794,977 + cpcT Synpcc7942_0800 0.88 -1.6 795,043 + -1.0 795,047 + -1.3 795,051 - -1.7 795,057 + +0.2 795,060 - -1.2 795,066 - +0.8 795,080 + -0.7 795,088 - +2.3 795,112 - +1.1 795,121 - +0.4 795,126 - -0.5 795,132 + +0.4 795,142 + +0.7 795,145 - +0.3 795,150 - -0.7 795,163 + -2.6 795,196 - sodB Synpcc7942_0801 0.11 -2.7 795,788 + -3.5 795,808 + -1.2 795,825 - -1.7 795,830 - +0.5 795,840 - -0.5 795,846 + -3.0 795,887 - +0.7 795,887 - +0.7 795,944 + -0.5 795,952 - -0.5 795,980 + Synpcc7942_0802 0.11 +1.0 796,014 - Synpcc7942_0802 0.16 -0.6 796,015 + Synpcc7942_0802 0.17 -2.2
Or see this region's nucleotide sequence