Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS24030

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS24025 and HSERO_RS24030 are separated by 168 nucleotidesHSERO_RS24030 and HSERO_RS24035 are separated by 605 nucleotides HSERO_RS24025: HSERO_RS24025 - LysR family transcriptional regulator, at 5,510,187 to 5,511,146 _RS24025 HSERO_RS24030: HSERO_RS24030 - hypothetical protein, at 5,511,315 to 5,511,548 _RS24030 HSERO_RS24035: HSERO_RS24035 - hypothetical protein, at 5,512,154 to 5,512,471 _RS24035 Position (kb) 5511 5512Strain fitness (log2 ratio) -1 0 1at 5511.057 kb on - strandat 5511.266 kb on + strandat 5511.274 kb on - strandat 5511.382 kb on + strand, within HSERO_RS24030at 5511.488 kb on - strand, within HSERO_RS24030at 5511.605 kb on - strandat 5511.681 kb on + strandat 5511.747 kb on + strandat 5511.748 kb on + strandat 5511.761 kb on + strandat 5511.769 kb on - strandat 5511.834 kb on - strandat 5511.903 kb on + strandat 5511.950 kb on + strandat 5512.101 kb on + strandat 5512.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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5,511,057 - +0.0
5,511,266 + -0.1
5,511,274 - -0.3
5,511,382 + HSERO_RS24030 0.29 -0.4
5,511,488 - HSERO_RS24030 0.74 -1.3
5,511,605 - -0.1
5,511,681 + -0.4
5,511,747 + +0.3
5,511,748 + +0.2
5,511,761 + -0.7
5,511,769 - +0.8
5,511,834 - +0.2
5,511,903 + -0.1
5,511,950 + +0.7
5,512,101 + -0.6
5,512,452 + +0.4

Or see this region's nucleotide sequence