Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.337.1 and Xcc-8004.338.1 overlap by 4 nucleotides Xcc-8004.338.1 and Xcc-8004.339.1 are separated by 284 nucleotides Xcc-8004.339.1 and Xcc-8004.340.1 are separated by 96 nucleotides Xcc-8004.340.1 and Xcc-8004.341.1 are separated by 20 nucleotides Xcc-8004.341.1 and Xcc-8004.342.1 are separated by 102 nucleotides
Xcc-8004.337.1: Xcc-8004.337.1 - ATPase, AFG1 family, at 325,963 to 327,057
Xcc-8004.337.1
Xcc-8004.338.1: Xcc-8004.338.1 - FIG01213664: hypothetical protein, at 327,054 to 327,734
Xcc-8004.338.1
Xcc-8004.339.1: Xcc-8004.339.1 - Organic hydroperoxide resistance transcriptional regulator, at 328,019 to 328,480
Xcc-8004.339.1
Xcc-8004.340.1: Xcc-8004.340.1 - Organic hydroperoxide resistance protein, at 328,577 to 329,005
Xcc-8004.340.1
Xcc-8004.341.1: Xcc-8004.341.1 - Lipase (EC 3.1.1.3), at 329,026 to 329,337
Xcc-8004.341.1
Xcc-8004.342.1: Xcc-8004.342.1 - Lipase, at 329,440 to 330,057
Xcc-8004.342.1
Position (kb) 328
329 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 327.031 kb on + strand at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.537 kb on + strand, within Xcc-8004.338.1 at 327.538 kb on - strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.628 kb on - strand, within Xcc-8004.338.1 at 327.657 kb on + strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.685 kb on + strand at 327.685 kb on + strand at 327.686 kb on - strand at 327.701 kb on + strand at 327.711 kb on + strand at 327.711 kb on + strand at 327.712 kb on - strand at 327.874 kb on + strand at 327.874 kb on + strand at 327.875 kb on - strand at 327.875 kb on - strand at 327.875 kb on - strand at 327.944 kb on + strand at 327.974 kb on - strand at 328.003 kb on - strand at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.095 kb on - strand, within Xcc-8004.339.1 at 328.157 kb on + strand, within Xcc-8004.339.1 at 328.157 kb on + strand, within Xcc-8004.339.1 at 328.166 kb on + strand, within Xcc-8004.339.1 at 328.167 kb on - strand, within Xcc-8004.339.1 at 328.167 kb on - strand, within Xcc-8004.339.1 at 328.232 kb on + strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.460 kb on - strand at 328.515 kb on + strand at 328.515 kb on + strand at 328.515 kb on + strand at 328.516 kb on - strand at 328.527 kb on + strand at 328.527 kb on + strand at 328.528 kb on - strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.748 kb on + strand, within Xcc-8004.340.1 at 328.748 kb on + strand, within Xcc-8004.340.1 at 328.749 kb on - strand, within Xcc-8004.340.1 at 328.868 kb on - strand, within Xcc-8004.340.1 at 328.955 kb on + strand, within Xcc-8004.340.1 at 329.335 kb on + strand at 329.335 kb on + strand at 329.336 kb on - strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.443 kb on + strand at 329.443 kb on + strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.452 kb on + strand at 329.452 kb on + strand at 329.452 kb on + strand at 329.453 kb on - strand at 329.453 kb on - strand at 329.453 kb on - strand at 329.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 327,031 + +0.1 327,300 + Xcc-8004.338.1 0.36 +2.9 327,300 + Xcc-8004.338.1 0.36 -0.1 327,300 + Xcc-8004.338.1 0.36 +1.6 327,300 + Xcc-8004.338.1 0.36 +1.1 327,300 + Xcc-8004.338.1 0.36 +0.3 327,301 - Xcc-8004.338.1 0.36 -0.8 327,301 - Xcc-8004.338.1 0.36 +0.3 327,301 - Xcc-8004.338.1 0.36 +0.5 327,537 + Xcc-8004.338.1 0.71 +0.1 327,538 - Xcc-8004.338.1 0.71 -0.8 327,576 + Xcc-8004.338.1 0.77 -0.2 327,576 + Xcc-8004.338.1 0.77 -0.4 327,576 + Xcc-8004.338.1 0.77 -2.1 327,576 + Xcc-8004.338.1 0.77 -0.9 327,576 + Xcc-8004.338.1 0.77 -0.8 327,577 - Xcc-8004.338.1 0.77 -1.0 327,577 - Xcc-8004.338.1 0.77 +0.7 327,577 - Xcc-8004.338.1 0.77 -0.4 327,577 - Xcc-8004.338.1 0.77 -0.2 327,627 + Xcc-8004.338.1 0.84 +0.9 327,627 + Xcc-8004.338.1 0.84 +0.1 327,627 + Xcc-8004.338.1 0.84 -0.1 327,628 - Xcc-8004.338.1 0.84 -1.5 327,657 + Xcc-8004.338.1 0.89 +0.6 327,658 - Xcc-8004.338.1 0.89 +1.3 327,658 - Xcc-8004.338.1 0.89 -0.3 327,658 - Xcc-8004.338.1 0.89 -0.6 327,658 - Xcc-8004.338.1 0.89 +0.8 327,658 - Xcc-8004.338.1 0.89 -0.7 327,685 + +0.2 327,685 + -0.8 327,686 - +0.0 327,701 + +0.5 327,711 + -1.3 327,711 + -0.7 327,712 - +0.9 327,874 + -0.6 327,874 + +1.2 327,875 - +0.3 327,875 - -0.9 327,875 - +0.4 327,944 + +0.1 327,974 - -2.1 328,003 - +0.4 328,094 + Xcc-8004.339.1 0.16 +0.3 328,094 + Xcc-8004.339.1 0.16 -1.2 328,094 + Xcc-8004.339.1 0.16 +0.9 328,094 + Xcc-8004.339.1 0.16 -1.1 328,095 - Xcc-8004.339.1 0.16 -0.7 328,157 + Xcc-8004.339.1 0.30 -1.5 328,157 + Xcc-8004.339.1 0.30 -0.6 328,166 + Xcc-8004.339.1 0.32 +0.0 328,167 - Xcc-8004.339.1 0.32 -0.7 328,167 - Xcc-8004.339.1 0.32 -0.3 328,232 + Xcc-8004.339.1 0.46 -0.1 328,233 - Xcc-8004.339.1 0.46 +0.0 328,233 - Xcc-8004.339.1 0.46 -1.1 328,233 - Xcc-8004.339.1 0.46 -0.7 328,233 - Xcc-8004.339.1 0.46 +0.1 328,233 - Xcc-8004.339.1 0.46 -0.5 328,233 - Xcc-8004.339.1 0.46 -0.5 328,459 + +1.9 328,459 + +0.1 328,459 + -0.9 328,459 + -0.0 328,460 - -0.1 328,515 + +1.1 328,515 + -0.4 328,515 + -0.3 328,516 - -0.1 328,527 + -0.8 328,527 + +0.3 328,528 - +0.7 328,601 + +0.4 328,601 + -1.6 328,601 + -0.6 328,601 + -0.7 328,601 + -2.1 328,601 + -2.4 328,601 + -2.2 328,601 + -0.7 328,602 - +0.7 328,602 - -0.9 328,602 - -0.7 328,602 - +0.6 328,602 - +0.8 328,748 + Xcc-8004.340.1 0.40 -0.2 328,748 + Xcc-8004.340.1 0.40 +1.2 328,749 - Xcc-8004.340.1 0.40 +0.2 328,868 - Xcc-8004.340.1 0.68 +0.9 328,955 + Xcc-8004.340.1 0.88 -1.1 329,335 + +0.1 329,335 + +2.3 329,336 - -0.8 329,344 + -0.5 329,344 + -0.6 329,344 + -0.5 329,344 + +0.5 329,344 + -0.8 329,344 + -1.0 329,344 + +0.4 329,344 + +0.5 329,344 + -0.6 329,344 + -0.4 329,345 - +0.4 329,345 - -0.9 329,345 - +0.6 329,345 - -0.1 329,345 - -0.1 329,345 - -1.9 329,345 - +0.5 329,345 - -1.1 329,345 - +0.2 329,345 - -0.1 329,345 - +0.0 329,443 + +1.0 329,443 + -0.6 329,444 - -0.6 329,444 - -1.1 329,444 - +0.4 329,444 - -1.3 329,444 - +1.4 329,444 - -0.3 329,444 - -0.8 329,444 - -1.1 329,444 - -0.6 329,444 - +0.6 329,444 - +0.0 329,444 - -1.3 329,444 - -0.4 329,444 - -1.3 329,444 - -0.1 329,452 + -0.5 329,452 + -1.0 329,452 + +0.9 329,453 - +0.1 329,453 - -0.5 329,453 - -0.5 329,453 - -0.6
Or see this region's nucleotide sequence