Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00805 and LRK54_RS00810 are separated by 50 nucleotides LRK54_RS00810 and LRK54_RS00815 overlap by 4 nucleotides
LRK54_RS00805: LRK54_RS00805 - segregation/condensation protein A, at 181,524 to 182,456
_RS00805
LRK54_RS00810: LRK54_RS00810 - SMC-Scp complex subunit ScpB, at 182,507 to 183,328
_RS00810
LRK54_RS00815: LRK54_RS00815 - pseudouridine synthase, at 183,325 to 184,842
_RS00815
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.588 kb on + strand at 181.588 kb on + strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.659 kb on + strand, within LRK54_RS00805 at 182.353 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 183.155 kb on + strand, within LRK54_RS00810 at 183.155 kb on + strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.317 kb on + strand at 183.318 kb on - strand at 183.318 kb on - strand at 183.601 kb on + strand, within LRK54_RS00815 at 183.601 kb on + strand, within LRK54_RS00815 at 183.601 kb on + strand, within LRK54_RS00815 at 183.601 kb on + strand, within LRK54_RS00815 at 183.601 kb on + strand, within LRK54_RS00815 at 183.601 kb on + strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.602 kb on - strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.805 kb on + strand, within LRK54_RS00815 at 183.806 kb on - strand, within LRK54_RS00815 at 183.806 kb on - strand, within LRK54_RS00815 at 183.806 kb on - strand, within LRK54_RS00815 at 183.806 kb on - strand, within LRK54_RS00815 at 183.806 kb on - strand, within LRK54_RS00815 at 184.198 kb on + strand, within LRK54_RS00815 at 184.267 kb on + strand, within LRK54_RS00815 at 184.267 kb on + strand, within LRK54_RS00815 at 184.267 kb on + strand, within LRK54_RS00815 at 184.267 kb on + strand, within LRK54_RS00815 at 184.267 kb on + strand, within LRK54_RS00815 at 184.268 kb on - strand, within LRK54_RS00815 at 184.268 kb on - strand, within LRK54_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 181,588 + -1.0 181,588 + -0.2 181,589 - +1.8 181,589 - +1.4 181,589 - -1.2 181,589 - -0.8 181,659 + LRK54_RS00805 0.14 +0.8 182,353 + LRK54_RS00805 0.89 -1.5 182,355 + LRK54_RS00805 0.89 -1.3 182,355 + LRK54_RS00805 0.89 -0.5 182,355 + LRK54_RS00805 0.89 +1.1 182,355 + LRK54_RS00805 0.89 +0.2 182,355 + LRK54_RS00805 0.89 -0.2 182,355 + LRK54_RS00805 0.89 -0.8 182,355 + LRK54_RS00805 0.89 -1.2 182,355 + LRK54_RS00805 0.89 -1.6 182,355 + LRK54_RS00805 0.89 -0.2 182,355 + LRK54_RS00805 0.89 +1.8 182,355 + LRK54_RS00805 0.89 +0.2 182,355 + LRK54_RS00805 0.89 -2.0 182,355 + LRK54_RS00805 0.89 -1.3 182,355 + LRK54_RS00805 0.89 -0.2 182,355 + LRK54_RS00805 0.89 -1.0 182,355 + LRK54_RS00805 0.89 +1.8 182,355 + LRK54_RS00805 0.89 -2.8 182,355 + LRK54_RS00805 0.89 -1.3 182,355 + LRK54_RS00805 0.89 +0.6 182,355 + LRK54_RS00805 0.89 -0.8 182,355 + LRK54_RS00805 0.89 +0.8 182,355 + LRK54_RS00805 0.89 -0.8 183,155 + LRK54_RS00810 0.79 -0.2 183,155 + LRK54_RS00810 0.79 -0.8 183,156 - LRK54_RS00810 0.79 -2.3 183,156 - LRK54_RS00810 0.79 -1.5 183,156 - LRK54_RS00810 0.79 +0.8 183,156 - LRK54_RS00810 0.79 -2.4 183,156 - LRK54_RS00810 0.79 -0.9 183,156 - LRK54_RS00810 0.79 -1.0 183,156 - LRK54_RS00810 0.79 -0.6 183,156 - LRK54_RS00810 0.79 -1.0 183,317 + +0.2 183,318 - -1.0 183,318 - -0.8 183,601 + LRK54_RS00815 0.18 +0.8 183,601 + LRK54_RS00815 0.18 +0.0 183,601 + LRK54_RS00815 0.18 -0.2 183,601 + LRK54_RS00815 0.18 -1.2 183,601 + LRK54_RS00815 0.18 -1.5 183,601 + LRK54_RS00815 0.18 +0.2 183,602 - LRK54_RS00815 0.18 -0.5 183,602 - LRK54_RS00815 0.18 -0.5 183,602 - LRK54_RS00815 0.18 -0.8 183,602 - LRK54_RS00815 0.18 +0.2 183,602 - LRK54_RS00815 0.18 -0.2 183,602 - LRK54_RS00815 0.18 -0.8 183,805 + LRK54_RS00815 0.32 +0.2 183,805 + LRK54_RS00815 0.32 -1.2 183,805 + LRK54_RS00815 0.32 +1.8 183,805 + LRK54_RS00815 0.32 -1.8 183,805 + LRK54_RS00815 0.32 -0.5 183,805 + LRK54_RS00815 0.32 -1.2 183,806 - LRK54_RS00815 0.32 -1.9 183,806 - LRK54_RS00815 0.32 -0.2 183,806 - LRK54_RS00815 0.32 -0.8 183,806 - LRK54_RS00815 0.32 +0.2 183,806 - LRK54_RS00815 0.32 -0.5 184,198 + LRK54_RS00815 0.58 -2.0 184,267 + LRK54_RS00815 0.62 -0.2 184,267 + LRK54_RS00815 0.62 +0.2 184,267 + LRK54_RS00815 0.62 -2.3 184,267 + LRK54_RS00815 0.62 +0.5 184,267 + LRK54_RS00815 0.62 +0.8 184,268 - LRK54_RS00815 0.62 -1.8 184,268 - LRK54_RS00815 0.62 -0.2
Or see this region's nucleotide sequence