Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01920

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01915 and RR42_RS01920 overlap by 4 nucleotidesRR42_RS01920 and RR42_RS01925 are separated by 148 nucleotidesRR42_RS01925 and RR42_RS01930 are separated by 99 nucleotides RR42_RS01915: RR42_RS01915 - cytochrome C oxidase subunit I, at 429,622 to 430,725 _RS01915 RR42_RS01920: RR42_RS01920 - protoheme IX farnesyltransferase, at 430,722 to 431,657 _RS01920 RR42_RS01925: RR42_RS01925 - photosynthetic protein synthase I, at 431,806 to 432,432 _RS01925 RR42_RS01930: RR42_RS01930 - RNA polymerase factor sigma-32, at 432,532 to 433,461 _RS01930 Position (kb) 430 431 432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 429.818 kb on - strand, within RR42_RS01915at 429.929 kb on - strand, within RR42_RS01915at 429.929 kb on - strand, within RR42_RS01915at 430.273 kb on - strand, within RR42_RS01915at 430.276 kb on + strand, within RR42_RS01915at 430.276 kb on + strand, within RR42_RS01915at 430.393 kb on + strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.655 kb on - strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.661 kb on + strandat 430.661 kb on + strandat 430.661 kb on + strandat 430.662 kb on - strandat 430.754 kb on + strandat 431.094 kb on + strand, within RR42_RS01920at 431.155 kb on - strand, within RR42_RS01920at 431.155 kb on - strand, within RR42_RS01920at 431.426 kb on + strand, within RR42_RS01920at 431.466 kb on - strand, within RR42_RS01920at 431.481 kb on + strand, within RR42_RS01920at 431.548 kb on - strand, within RR42_RS01920at 431.592 kb on + strandat 431.592 kb on + strandat 431.592 kb on + strandat 431.631 kb on + strandat 431.631 kb on + strandat 431.632 kb on - strandat 431.632 kb on - strandat 431.738 kb on + strandat 431.739 kb on - strandat 431.739 kb on - strandat 431.739 kb on - strandat 432.046 kb on - strand, within RR42_RS01925at 432.046 kb on - strand, within RR42_RS01925at 432.046 kb on - strand, within RR42_RS01925at 432.165 kb on + strand, within RR42_RS01925at 432.165 kb on + strand, within RR42_RS01925at 432.187 kb on + strand, within RR42_RS01925at 432.187 kb on + strand, within RR42_RS01925at 432.187 kb on + strand, within RR42_RS01925at 432.187 kb on + strand, within RR42_RS01925at 432.188 kb on - strand, within RR42_RS01925at 432.277 kb on + strand, within RR42_RS01925at 432.277 kb on + strand, within RR42_RS01925at 432.277 kb on + strand, within RR42_RS01925at 432.311 kb on - strand, within RR42_RS01925at 432.311 kb on - strand, within RR42_RS01925at 432.311 kb on - strand, within RR42_RS01925at 432.337 kb on + strand, within RR42_RS01925at 432.337 kb on + strand, within RR42_RS01925at 432.338 kb on - strand, within RR42_RS01925at 432.338 kb on - strand, within RR42_RS01925at 432.338 kb on - strand, within RR42_RS01925at 432.338 kb on - strand, within RR42_RS01925at 432.477 kb on + strandat 432.511 kb on + strandat 432.512 kb on - strandat 432.526 kb on + strandat 432.526 kb on + strandat 432.526 kb on + strandat 432.527 kb on - strandat 432.527 kb on - strandat 432.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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429,818 - RR42_RS01915 0.18 +0.4
429,929 - RR42_RS01915 0.28 +2.0
429,929 - RR42_RS01915 0.28 +1.4
430,273 - RR42_RS01915 0.59 +1.0
430,276 + RR42_RS01915 0.59 +0.3
430,276 + RR42_RS01915 0.59 +0.7
430,393 + RR42_RS01915 0.70 -2.2
430,394 - RR42_RS01915 0.70 -0.2
430,394 - RR42_RS01915 0.70 +2.1
430,394 - RR42_RS01915 0.70 +2.9
430,655 - +0.6
430,659 + -1.0
430,659 + +1.1
430,659 + -2.8
430,659 + +0.3
430,659 + +2.1
430,661 + -2.9
430,661 + +0.9
430,661 + -2.9
430,662 - -0.4
430,754 + -1.2
431,094 + RR42_RS01920 0.40 -3.8
431,155 - RR42_RS01920 0.46 -0.2
431,155 - RR42_RS01920 0.46 -3.4
431,426 + RR42_RS01920 0.75 -3.7
431,466 - RR42_RS01920 0.79 -0.9
431,481 + RR42_RS01920 0.81 -1.2
431,548 - RR42_RS01920 0.88 -1.9
431,592 + -1.9
431,592 + -2.0
431,592 + -0.7
431,631 + +0.4
431,631 + +1.6
431,632 - +2.3
431,632 - +0.9
431,738 + -3.0
431,739 - +2.4
431,739 - +3.7
431,739 - +1.2
432,046 - RR42_RS01925 0.38 +0.2
432,046 - RR42_RS01925 0.38 -3.8
432,046 - RR42_RS01925 0.38 -3.8
432,165 + RR42_RS01925 0.57 +2.1
432,165 + RR42_RS01925 0.57 +1.1
432,187 + RR42_RS01925 0.61 -2.4
432,187 + RR42_RS01925 0.61 -3.3
432,187 + RR42_RS01925 0.61 -3.5
432,187 + RR42_RS01925 0.61 -0.2
432,188 - RR42_RS01925 0.61 -2.6
432,277 + RR42_RS01925 0.75 -2.8
432,277 + RR42_RS01925 0.75 -0.4
432,277 + RR42_RS01925 0.75 -4.9
432,311 - RR42_RS01925 0.81 -3.9
432,311 - RR42_RS01925 0.81 -2.0
432,311 - RR42_RS01925 0.81 +0.2
432,337 + RR42_RS01925 0.85 -4.7
432,337 + RR42_RS01925 0.85 -3.5
432,338 - RR42_RS01925 0.85 -0.9
432,338 - RR42_RS01925 0.85 +1.7
432,338 - RR42_RS01925 0.85 -2.4
432,338 - RR42_RS01925 0.85 -1.3
432,477 + -0.7
432,511 + -1.3
432,512 - -0.6
432,526 + -0.9
432,526 + -0.2
432,526 + +0.7
432,527 - +1.7
432,527 - +0.8
432,527 - +0.3

Or see this region's nucleotide sequence