Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1906.1 and Xcc-8004.1908.1 overlap by 4 nucleotides Xcc-8004.1908.1 and Xcc-8004.1909.1 are separated by 10 nucleotides Xcc-8004.1909.1 and Xcc-8004.1910.1 are separated by 37 nucleotides Xcc-8004.1910.1 and Xcc-8004.1911.1 overlap by 161 nucleotides Xcc-8004.1911.1 and Xcc-8004.1912.1 overlap by 26 nucleotides
Xcc-8004.1906.1: Xcc-8004.1906.1 - lipoprotein, at 1,839,433 to 1,840,470
Xcc-8004.1906.1
Xcc-8004.1908.1: Xcc-8004.1908.1 - FIG01211507: hypothetical protein, at 1,840,467 to 1,841,369
Xcc-8004.1908.1
Xcc-8004.1909.1: Xcc-8004.1909.1 - FIG01212339: hypothetical protein, at 1,841,380 to 1,841,964
Xcc-8004.1909.1
Xcc-8004.1910.1: Xcc-8004.1910.1 - hypothetical protein, at 1,842,002 to 1,842,571
Xcc-8004.1910.1
Xcc-8004.1911.1: Xcc-8004.1911.1 - hypothetical protein, at 1,842,411 to 1,842,770
Xcc-8004.1911.1
Xcc-8004.1912.1: Xcc-8004.1912.1 - Cell wall-associated hydrolases (invasion-associated proteins), at 1,842,745 to 1,843,488
Xcc-8004.1912.1
Position (kb) 1841
1842 Strain fitness (log2 ratio) -2
-1
0
1 at 1840.393 kb on - strand at 1840.393 kb on - strand at 1840.422 kb on + strand at 1840.423 kb on - strand at 1840.534 kb on + strand at 1840.535 kb on - strand at 1840.535 kb on - strand at 1840.573 kb on + strand, within Xcc-8004.1908.1 at 1840.574 kb on - strand, within Xcc-8004.1908.1 at 1840.880 kb on - strand, within Xcc-8004.1908.1 at 1840.972 kb on + strand, within Xcc-8004.1908.1 at 1840.976 kb on + strand, within Xcc-8004.1908.1 at 1841.026 kb on + strand, within Xcc-8004.1908.1 at 1841.026 kb on + strand, within Xcc-8004.1908.1 at 1841.027 kb on - strand, within Xcc-8004.1908.1 at 1841.027 kb on - strand, within Xcc-8004.1908.1 at 1841.158 kb on + strand, within Xcc-8004.1908.1 at 1841.158 kb on + strand, within Xcc-8004.1908.1 at 1841.158 kb on + strand, within Xcc-8004.1908.1 at 1841.158 kb on + strand, within Xcc-8004.1908.1 at 1841.158 kb on + strand, within Xcc-8004.1908.1 at 1841.159 kb on - strand, within Xcc-8004.1908.1 at 1841.159 kb on - strand, within Xcc-8004.1908.1 at 1841.159 kb on - strand, within Xcc-8004.1908.1 at 1841.159 kb on - strand, within Xcc-8004.1908.1 at 1841.166 kb on - strand, within Xcc-8004.1908.1 at 1841.284 kb on + strand at 1841.284 kb on + strand at 1841.284 kb on + strand at 1841.285 kb on - strand at 1841.285 kb on - strand at 1841.289 kb on + strand at 1841.289 kb on + strand at 1841.426 kb on + strand at 1841.447 kb on + strand, within Xcc-8004.1909.1 at 1841.588 kb on + strand, within Xcc-8004.1909.1 at 1841.727 kb on + strand, within Xcc-8004.1909.1 at 1841.728 kb on - strand, within Xcc-8004.1909.1 at 1841.728 kb on - strand, within Xcc-8004.1909.1 at 1841.870 kb on + strand, within Xcc-8004.1909.1 at 1841.870 kb on + strand, within Xcc-8004.1909.1 at 1841.871 kb on - strand, within Xcc-8004.1909.1 at 1841.871 kb on - strand, within Xcc-8004.1909.1 at 1841.947 kb on + strand at 1841.948 kb on - strand at 1842.008 kb on + strand at 1842.008 kb on + strand at 1842.008 kb on + strand at 1842.009 kb on - strand at 1842.035 kb on + strand at 1842.036 kb on - strand at 1842.064 kb on + strand, within Xcc-8004.1910.1 at 1842.064 kb on + strand, within Xcc-8004.1910.1 at 1842.065 kb on - strand, within Xcc-8004.1910.1 at 1842.132 kb on + strand, within Xcc-8004.1910.1 at 1842.132 kb on + strand, within Xcc-8004.1910.1 at 1842.133 kb on - strand, within Xcc-8004.1910.1 at 1842.166 kb on + strand, within Xcc-8004.1910.1 at 1842.166 kb on + strand, within Xcc-8004.1910.1 at 1842.166 kb on + strand, within Xcc-8004.1910.1 at 1842.247 kb on + strand, within Xcc-8004.1910.1 at 1842.247 kb on + strand, within Xcc-8004.1910.1 at 1842.247 kb on + strand, within Xcc-8004.1910.1 at 1842.248 kb on - strand, within Xcc-8004.1910.1 at 1842.248 kb on - strand, within Xcc-8004.1910.1 at 1842.248 kb on - strand, within Xcc-8004.1910.1 at 1842.248 kb on - strand, within Xcc-8004.1910.1 at 1842.263 kb on + strand, within Xcc-8004.1910.1 at 1842.263 kb on + strand, within Xcc-8004.1910.1 at 1842.263 kb on + strand, within Xcc-8004.1910.1 at 1842.264 kb on - strand, within Xcc-8004.1910.1 at 1842.290 kb on + strand, within Xcc-8004.1910.1 at 1842.290 kb on + strand, within Xcc-8004.1910.1 at 1842.290 kb on + strand, within Xcc-8004.1910.1 at 1842.290 kb on + strand, within Xcc-8004.1910.1 at 1842.290 kb on + strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.291 kb on - strand, within Xcc-8004.1910.1 at 1842.347 kb on - strand, within Xcc-8004.1910.1 at 1842.419 kb on + strand at 1842.419 kb on + strand at 1842.550 kb on + strand at 1842.551 kb on - strand at 1842.551 kb on - strand at 1842.551 kb on - strand at 1842.615 kb on - strand, within Xcc-8004.1911.1 at 1842.620 kb on + strand, within Xcc-8004.1911.1 at 1842.620 kb on + strand, within Xcc-8004.1911.1 at 1842.620 kb on + strand, within Xcc-8004.1911.1 at 1842.621 kb on - strand, within Xcc-8004.1911.1 at 1842.621 kb on - strand, within Xcc-8004.1911.1 at 1842.726 kb on + strand, within Xcc-8004.1911.1 at 1842.862 kb on + strand, within Xcc-8004.1912.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,840,393 - +0.8 1,840,393 - +0.3 1,840,422 + -0.2 1,840,423 - +0.4 1,840,534 + +1.0 1,840,535 - -0.3 1,840,535 - +1.2 1,840,573 + Xcc-8004.1908.1 0.12 -1.0 1,840,574 - Xcc-8004.1908.1 0.12 +0.0 1,840,880 - Xcc-8004.1908.1 0.46 +0.5 1,840,972 + Xcc-8004.1908.1 0.56 -0.2 1,840,976 + Xcc-8004.1908.1 0.56 -0.0 1,841,026 + Xcc-8004.1908.1 0.62 +0.0 1,841,026 + Xcc-8004.1908.1 0.62 +0.9 1,841,027 - Xcc-8004.1908.1 0.62 -0.1 1,841,027 - Xcc-8004.1908.1 0.62 -1.9 1,841,158 + Xcc-8004.1908.1 0.77 +0.2 1,841,158 + Xcc-8004.1908.1 0.77 -0.9 1,841,158 + Xcc-8004.1908.1 0.77 -0.7 1,841,158 + Xcc-8004.1908.1 0.77 +0.8 1,841,158 + Xcc-8004.1908.1 0.77 +1.3 1,841,159 - Xcc-8004.1908.1 0.77 -0.6 1,841,159 - Xcc-8004.1908.1 0.77 -0.6 1,841,159 - Xcc-8004.1908.1 0.77 +0.0 1,841,159 - Xcc-8004.1908.1 0.77 -1.8 1,841,166 - Xcc-8004.1908.1 0.77 -0.8 1,841,284 + -1.2 1,841,284 + +0.6 1,841,284 + +0.8 1,841,285 - +1.0 1,841,285 - -0.1 1,841,289 + -0.2 1,841,289 + -0.1 1,841,426 + +0.2 1,841,447 + Xcc-8004.1909.1 0.11 -0.8 1,841,588 + Xcc-8004.1909.1 0.36 -0.1 1,841,727 + Xcc-8004.1909.1 0.59 -1.3 1,841,728 - Xcc-8004.1909.1 0.59 -0.3 1,841,728 - Xcc-8004.1909.1 0.59 +0.0 1,841,870 + Xcc-8004.1909.1 0.84 -0.7 1,841,870 + Xcc-8004.1909.1 0.84 +0.2 1,841,871 - Xcc-8004.1909.1 0.84 -0.9 1,841,871 - Xcc-8004.1909.1 0.84 -0.7 1,841,947 + +0.6 1,841,948 - +0.4 1,842,008 + -0.7 1,842,008 + +0.4 1,842,008 + +0.9 1,842,009 - -2.4 1,842,035 + +0.0 1,842,036 - -1.3 1,842,064 + Xcc-8004.1910.1 0.11 +1.4 1,842,064 + Xcc-8004.1910.1 0.11 +0.0 1,842,065 - Xcc-8004.1910.1 0.11 -0.2 1,842,132 + Xcc-8004.1910.1 0.23 -0.2 1,842,132 + Xcc-8004.1910.1 0.23 +1.5 1,842,133 - Xcc-8004.1910.1 0.23 +0.6 1,842,166 + Xcc-8004.1910.1 0.29 -0.6 1,842,166 + Xcc-8004.1910.1 0.29 +1.0 1,842,166 + Xcc-8004.1910.1 0.29 +0.0 1,842,247 + Xcc-8004.1910.1 0.43 +1.0 1,842,247 + Xcc-8004.1910.1 0.43 -0.1 1,842,247 + Xcc-8004.1910.1 0.43 +0.6 1,842,248 - Xcc-8004.1910.1 0.43 +0.6 1,842,248 - Xcc-8004.1910.1 0.43 -1.2 1,842,248 - Xcc-8004.1910.1 0.43 +0.6 1,842,248 - Xcc-8004.1910.1 0.43 +0.8 1,842,263 + Xcc-8004.1910.1 0.46 -1.2 1,842,263 + Xcc-8004.1910.1 0.46 -0.1 1,842,263 + Xcc-8004.1910.1 0.46 -1.3 1,842,264 - Xcc-8004.1910.1 0.46 +0.4 1,842,290 + Xcc-8004.1910.1 0.51 +0.4 1,842,290 + Xcc-8004.1910.1 0.51 +0.4 1,842,290 + Xcc-8004.1910.1 0.51 -1.1 1,842,290 + Xcc-8004.1910.1 0.51 +1.4 1,842,290 + Xcc-8004.1910.1 0.51 -1.1 1,842,291 - Xcc-8004.1910.1 0.51 -1.3 1,842,291 - Xcc-8004.1910.1 0.51 +0.0 1,842,291 - Xcc-8004.1910.1 0.51 -2.6 1,842,291 - Xcc-8004.1910.1 0.51 -0.2 1,842,291 - Xcc-8004.1910.1 0.51 +0.3 1,842,291 - Xcc-8004.1910.1 0.51 +1.3 1,842,291 - Xcc-8004.1910.1 0.51 +1.1 1,842,291 - Xcc-8004.1910.1 0.51 +1.0 1,842,291 - Xcc-8004.1910.1 0.51 -0.1 1,842,291 - Xcc-8004.1910.1 0.51 +0.8 1,842,291 - Xcc-8004.1910.1 0.51 +0.3 1,842,291 - Xcc-8004.1910.1 0.51 -0.3 1,842,347 - Xcc-8004.1910.1 0.61 +0.7 1,842,419 + -0.3 1,842,419 + +0.6 1,842,550 + +0.3 1,842,551 - -0.1 1,842,551 - +0.9 1,842,551 - +0.4 1,842,615 - Xcc-8004.1911.1 0.57 +0.0 1,842,620 + Xcc-8004.1911.1 0.58 -0.1 1,842,620 + Xcc-8004.1911.1 0.58 -0.7 1,842,620 + Xcc-8004.1911.1 0.58 -0.3 1,842,621 - Xcc-8004.1911.1 0.58 +0.6 1,842,621 - Xcc-8004.1911.1 0.58 -0.3 1,842,726 + Xcc-8004.1911.1 0.88 +0.2 1,842,862 + Xcc-8004.1912.1 0.16 +0.3
Or see this region's nucleotide sequence