Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_369 and Pf1N1B4_370 are separated by 201 nucleotides Pf1N1B4_370 and Pf1N1B4_371 are separated by 145 nucleotides Pf1N1B4_371 and Pf1N1B4_372 are separated by 105 nucleotides
Pf1N1B4_369 - membrane protein, putative, at 436,836 to 437,798
_369
Pf1N1B4_370 - hypothetical protein, at 438,000 to 438,194
_370
Pf1N1B4_371 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 438,340 to 439,572
_371
Pf1N1B4_372 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 439,678 to 441,201
_372
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 437.524 kb on - strand at 437.524 kb on - strand, within Pf1N1B4_369 at 437.524 kb on - strand, within Pf1N1B4_369 at 437.527 kb on + strand, within Pf1N1B4_369 at 437.528 kb on - strand, within Pf1N1B4_369 at 437.528 kb on - strand, within Pf1N1B4_369 at 437.536 kb on + strand, within Pf1N1B4_369 at 437.536 kb on + strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.633 kb on - strand, within Pf1N1B4_369 at 437.633 kb on - strand, within Pf1N1B4_369 at 437.770 kb on + strand at 437.771 kb on - strand at 437.771 kb on - strand at 437.771 kb on - strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.836 kb on - strand at 437.836 kb on - strand at 437.836 kb on - strand at 437.907 kb on + strand at 437.907 kb on + strand at 437.907 kb on + strand at 437.919 kb on + strand at 437.920 kb on - strand at 437.963 kb on + strand at 437.963 kb on + strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 438.003 kb on + strand at 438.003 kb on + strand at 438.003 kb on + strand at 438.004 kb on - strand at 438.004 kb on - strand at 438.004 kb on - strand at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.157 kb on - strand, within Pf1N1B4_370 at 438.157 kb on - strand, within Pf1N1B4_370 at 438.158 kb on + strand, within Pf1N1B4_370 at 438.192 kb on + strand at 438.192 kb on + strand at 438.193 kb on - strand at 438.252 kb on + strand at 438.269 kb on - strand at 438.269 kb on - strand at 438.272 kb on + strand at 438.272 kb on + strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.326 kb on - strand at 438.341 kb on + strand at 438.342 kb on - strand at 438.342 kb on - strand at 438.345 kb on + strand at 438.346 kb on - strand at 438.346 kb on - strand at 438.346 kb on - strand at 438.386 kb on + strand at 438.386 kb on + strand at 438.386 kb on + strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.391 kb on - strand at 438.416 kb on - strand at 438.416 kb on - strand at 438.560 kb on + strand, within Pf1N1B4_371 at 438.560 kb on + strand, within Pf1N1B4_371 at 438.560 kb on + strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.597 kb on - strand, within Pf1N1B4_371 at 438.983 kb on + strand at 438.983 kb on + strand, within Pf1N1B4_371 at 438.984 kb on - strand at 439.068 kb on - strand, within Pf1N1B4_371 at 439.068 kb on - strand, within Pf1N1B4_371 at 439.068 kb on - strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand at 439.139 kb on + strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.577 kb on + strand at 439.577 kb on + strand at 439.577 kb on + strand at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.618 kb on + strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.629 kb on + strand at 439.630 kb on - strand at 439.816 kb on + strand at 439.817 kb on - strand at 440.171 kb on + strand, within Pf1N1B4_372 at 440.223 kb on - strand, within Pf1N1B4_372 at 440.381 kb on + strand, within Pf1N1B4_372 at 440.382 kb on - strand, within Pf1N1B4_372 at 440.547 kb on + strand, within Pf1N1B4_372 at 440.549 kb on + strand, within Pf1N1B4_372 at 440.550 kb on - strand, within Pf1N1B4_372
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 437,524 - -0.1 437,524 - Pf1N1B4_369 0.71 -1.1 437,524 - Pf1N1B4_369 0.71 +0.9 437,527 + Pf1N1B4_369 0.72 +0.4 437,528 - Pf1N1B4_369 0.72 -1.7 437,528 - Pf1N1B4_369 0.72 +0.4 437,536 + Pf1N1B4_369 0.73 +2.0 437,536 + Pf1N1B4_369 0.73 -0.1 437,537 - Pf1N1B4_369 0.73 -0.1 437,537 - Pf1N1B4_369 0.73 -2.7 437,537 - Pf1N1B4_369 0.73 -0.1 437,537 - Pf1N1B4_369 0.73 -0.4 437,537 - Pf1N1B4_369 0.73 -0.1 437,537 - Pf1N1B4_369 0.73 -0.7 437,633 - Pf1N1B4_369 0.83 +0.3 437,633 - Pf1N1B4_369 0.83 -0.8 437,770 + +0.9 437,771 - -1.7 437,771 - -0.1 437,771 - -1.1 437,792 + -3.1 437,792 + -3.4 437,792 + +0.9 437,792 + +0.3 437,792 + -2.7 437,793 - +0.2 437,793 - -0.5 437,793 - +2.4 437,793 - -1.1 437,793 - -0.1 437,793 - -1.1 437,793 - +1.5 437,793 - -1.1 437,793 - -1.1 437,793 - -0.1 437,836 - -0.6 437,836 - -0.8 437,836 - +1.5 437,907 + +0.8 437,907 + +0.3 437,907 + -0.1 437,919 + -1.4 437,920 - -0.7 437,963 + -1.1 437,963 + -1.2 437,964 - +1.3 437,964 - +1.9 437,964 - -1.7 437,964 - +0.7 437,964 - +0.9 438,003 + -1.7 438,003 + -1.7 438,003 + -1.7 438,004 - -2.1 438,004 - -2.4 438,004 - -2.1 438,081 + Pf1N1B4_370 0.42 -1.7 438,081 + Pf1N1B4_370 0.42 +0.7 438,081 + Pf1N1B4_370 0.42 +2.5 438,081 + Pf1N1B4_370 0.42 +1.3 438,081 + Pf1N1B4_370 0.42 -2.4 438,081 + Pf1N1B4_370 0.42 -1.1 438,081 + Pf1N1B4_370 0.42 +0.9 438,081 + Pf1N1B4_370 0.42 -0.7 438,082 - Pf1N1B4_370 0.42 +0.4 438,082 - Pf1N1B4_370 0.42 +2.3 438,082 - Pf1N1B4_370 0.42 -1.1 438,156 + Pf1N1B4_370 0.80 -1.9 438,156 + Pf1N1B4_370 0.80 +0.3 438,156 + Pf1N1B4_370 0.80 +0.5 438,156 + Pf1N1B4_370 0.80 -1.3 438,156 + Pf1N1B4_370 0.80 +1.4 438,156 + Pf1N1B4_370 0.80 +2.5 438,157 - Pf1N1B4_370 0.81 -0.7 438,157 - Pf1N1B4_370 0.81 +0.3 438,158 + Pf1N1B4_370 0.81 -2.9 438,192 + -1.4 438,192 + -0.1 438,193 - +1.5 438,252 + +2.5 438,269 - -1.1 438,269 - +0.4 438,272 + -0.1 438,272 + -1.9 438,273 - -0.7 438,273 - -1.1 438,273 - -1.1 438,273 - +1.3 438,273 - +0.7 438,273 - -1.4 438,273 - -0.1 438,326 - +0.3 438,341 + -3.2 438,342 - -0.1 438,342 - +0.4 438,345 + -2.4 438,346 - +1.3 438,346 - -2.1 438,346 - -1.1 438,386 + -0.7 438,386 + +1.1 438,386 + -2.7 438,387 - -1.1 438,387 - +0.9 438,387 - -1.1 438,387 - -0.5 438,391 - +0.9 438,416 - +0.4 438,416 - +2.5 438,560 + Pf1N1B4_371 0.18 -1.3 438,560 + Pf1N1B4_371 0.18 +1.5 438,560 + Pf1N1B4_371 0.18 -2.1 438,561 - Pf1N1B4_371 0.18 -1.7 438,561 - Pf1N1B4_371 0.18 -0.4 438,561 - Pf1N1B4_371 0.18 -0.5 438,561 - -0.1 438,561 - Pf1N1B4_371 0.18 -1.1 438,561 - Pf1N1B4_371 0.18 -1.4 438,597 - Pf1N1B4_371 0.21 -0.1 438,983 + -1.1 438,983 + Pf1N1B4_371 0.52 -0.3 438,984 - +1.2 439,068 - Pf1N1B4_371 0.59 -0.4 439,068 - Pf1N1B4_371 0.59 +1.2 439,068 - Pf1N1B4_371 0.59 +1.3 439,139 + Pf1N1B4_371 0.65 -0.4 439,139 + Pf1N1B4_371 0.65 -0.9 439,139 + Pf1N1B4_371 0.65 -2.1 439,139 + Pf1N1B4_371 0.65 -2.4 439,139 + Pf1N1B4_371 0.65 +0.8 439,139 + Pf1N1B4_371 0.65 +1.5 439,139 + +0.9 439,139 + Pf1N1B4_371 0.65 -1.7 439,140 - Pf1N1B4_371 0.65 -0.8 439,140 - Pf1N1B4_371 0.65 -1.4 439,140 - Pf1N1B4_371 0.65 -0.1 439,140 - Pf1N1B4_371 0.65 +1.9 439,140 - Pf1N1B4_371 0.65 -0.1 439,140 - Pf1N1B4_371 0.65 +0.1 439,577 + -0.1 439,577 + -0.1 439,577 + +0.6 439,577 + -2.1 439,578 - -2.1 439,578 - -1.1 439,578 - +1.9 439,578 - +1.8 439,618 + -1.1 439,619 - -1.1 439,619 - -1.1 439,619 - +0.5 439,619 - +2.9 439,629 + -0.3 439,630 - -2.1 439,816 + -0.1 439,817 - -3.4 440,171 + Pf1N1B4_372 0.32 -0.5 440,223 - Pf1N1B4_372 0.36 -3.7 440,381 + Pf1N1B4_372 0.46 -0.1 440,382 - Pf1N1B4_372 0.46 +0.2 440,547 + Pf1N1B4_372 0.57 -2.1 440,549 + Pf1N1B4_372 0.57 +1.5 440,550 - Pf1N1B4_372 0.57 +2.3
Or see this region's nucleotide sequence