Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2586

Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2585 and GFF2586 overlap by 4 nucleotidesGFF2586 and GFF2587 are separated by 44 nucleotidesGFF2587 and GFF2588 are separated by 398 nucleotides GFF2585 - SrfB, at 106,713 to 109,694 GFF2585 GFF2586 - Putative virulence factor, at 109,691 to 111,835 GFF2586 GFF2587 - FIG00638290: hypothetical protein, at 111,880 to 112,053 GFF2587 GFF2588 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 112,452 to 113,897 GFF2588 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1at 108.699 kb on - strand, within GFF2585at 108.767 kb on - strand, within GFF2585at 108.822 kb on + strand, within GFF2585at 108.822 kb on + strand, within GFF2585at 108.823 kb on - strand, within GFF2585at 108.825 kb on - strand, within GFF2585at 109.061 kb on - strand, within GFF2585at 109.098 kb on - strand, within GFF2585at 109.098 kb on - strand, within GFF2585at 109.108 kb on + strand, within GFF2585at 109.183 kb on + strand, within GFF2585at 109.184 kb on - strand, within GFF2585at 109.204 kb on + strand, within GFF2585at 109.258 kb on + strand, within GFF2585at 109.259 kb on - strand, within GFF2585at 109.284 kb on - strand, within GFF2585at 109.292 kb on + strand, within GFF2585at 109.374 kb on - strand, within GFF2585at 109.457 kb on + strandat 109.558 kb on + strandat 109.558 kb on + strandat 109.615 kb on + strandat 109.670 kb on + strandat 109.683 kb on + strandat 109.799 kb on - strandat 109.958 kb on + strand, within GFF2586at 109.964 kb on + strand, within GFF2586at 109.965 kb on - strand, within GFF2586at 110.276 kb on - strand, within GFF2586at 110.276 kb on - strand, within GFF2586at 110.407 kb on + strand, within GFF2586at 110.827 kb on - strand, within GFF2586at 111.007 kb on + strand, within GFF2586at 111.008 kb on - strand, within GFF2586at 111.070 kb on - strand, within GFF2586at 111.480 kb on - strand, within GFF2586at 111.563 kb on - strand, within GFF2586at 111.725 kb on + strandat 111.725 kb on + strandat 111.726 kb on - strandat 111.746 kb on + strandat 111.747 kb on - strandat 111.747 kb on - strandat 111.816 kb on + strandat 112.095 kb on - strandat 112.135 kb on + strandat 112.135 kb on + strandat 112.215 kb on - strandat 112.217 kb on + strandat 112.217 kb on + strandat 112.218 kb on - strandat 112.218 kb on - strandat 112.220 kb on - strandat 112.284 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.513 kb on - strandat 112.577 kb on + strandat 112.580 kb on + strandat 112.613 kb on + strand, within GFF2588at 112.719 kb on + strand, within GFF2588at 112.722 kb on - strand, within GFF2588at 112.722 kb on - strand, within GFF2588at 112.722 kb on - strand, within GFF2588at 112.722 kb on - strand, within GFF2588at 112.802 kb on - strand, within GFF2588at 112.802 kb on - strand, within GFF2588

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
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108,699 - GFF2585 0.67 +0.7
108,767 - GFF2585 0.69 +0.4
108,822 + GFF2585 0.71 +0.4
108,822 + GFF2585 0.71 +0.6
108,823 - GFF2585 0.71 +0.6
108,825 - GFF2585 0.71 +0.4
109,061 - GFF2585 0.79 +0.2
109,098 - GFF2585 0.80 +0.2
109,098 - GFF2585 0.80 +0.6
109,108 + GFF2585 0.80 +0.2
109,183 + GFF2585 0.83 -0.1
109,184 - GFF2585 0.83 +0.6
109,204 + GFF2585 0.84 +1.0
109,258 + GFF2585 0.85 +0.1
109,259 - GFF2585 0.85 +0.1
109,284 - GFF2585 0.86 +0.9
109,292 + GFF2585 0.86 -0.1
109,374 - GFF2585 0.89 +0.1
109,457 + +0.4
109,558 + +0.4
109,558 + +0.6
109,615 + -0.1
109,670 + +1.0
109,683 + +0.6
109,799 - +0.7
109,958 + GFF2586 0.12 +0.8
109,964 + GFF2586 0.13 +0.4
109,965 - GFF2586 0.13 +0.8
110,276 - GFF2586 0.27 +0.4
110,276 - GFF2586 0.27 +0.3
110,407 + GFF2586 0.33 +0.3
110,827 - GFF2586 0.53 +0.2
111,007 + GFF2586 0.61 +0.3
111,008 - GFF2586 0.61 +0.8
111,070 - GFF2586 0.64 +0.2
111,480 - GFF2586 0.83 +0.1
111,563 - GFF2586 0.87 +0.7
111,725 + +0.6
111,725 + +0.2
111,726 - +1.3
111,746 + +0.2
111,747 - +1.3
111,747 - +0.5
111,816 + -0.7
112,095 - -0.3
112,135 + +0.1
112,135 + +0.1
112,215 - -1.0
112,217 + -0.8
112,217 + -1.0
112,218 - +0.8
112,218 - -0.5
112,220 - -0.3
112,284 + -0.4
112,501 + -0.1
112,501 + -0.0
112,501 + +0.5
112,513 - -0.1
112,577 + -0.2
112,580 + +0.1
112,613 + GFF2588 0.11 -1.4
112,719 + GFF2588 0.18 +0.1
112,722 - GFF2588 0.19 +1.6
112,722 - GFF2588 0.19 -2.8
112,722 - GFF2588 0.19 +0.6
112,722 - GFF2588 0.19 -0.5
112,802 - GFF2588 0.24 +0.1
112,802 - GFF2588 0.24 +0.0

Or see this region's nucleotide sequence