Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
Position (kb) 697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 696.804 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.894 kb on - strand, within SMc02325 at 696.896 kb on - strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.692 kb on - strand at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.889 kb on + strand, within SMc03001 at 699.040 kb on - strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.265 kb on - strand, within SMc03001 at 699.321 kb on + strand, within SMc03001 at 699.363 kb on + strand, within SMc03001 at 699.399 kb on + strand, within SMc03001
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 696,804 - SMc02325 0.36 -0.5 696,804 - SMc02325 0.36 +0.6 696,894 - SMc02325 0.42 -0.4 696,896 - SMc02325 0.42 -2.4 697,115 + SMc02325 0.56 -0.8 697,115 + SMc02325 0.56 -1.8 697,116 - SMc02325 0.56 -0.6 697,116 - SMc02325 0.56 -0.4 697,256 + SMc02325 0.66 -0.8 697,256 + SMc02325 0.66 -4.7 697,256 + SMc02325 0.66 -1.4 697,257 - SMc02325 0.66 +0.3 697,257 - SMc02325 0.66 -2.0 697,257 - SMc02325 0.66 +2.2 697,257 - SMc02325 0.66 +1.0 697,692 - -2.2 697,893 + SMc03000 0.12 -1.2 697,893 + SMc03000 0.12 +0.0 698,118 + SMc03000 0.35 -0.5 698,118 + SMc03000 0.35 -1.4 698,118 + SMc03000 0.35 -2.6 698,158 + SMc03000 0.39 +0.0 698,158 + SMc03000 0.39 -1.2 698,158 + SMc03000 0.39 +0.9 698,413 + SMc03000 0.65 +0.8 698,414 - SMc03000 0.66 -2.3 698,449 + SMc03000 0.69 +0.6 698,449 + SMc03000 0.69 +2.0 698,631 + SMc03000 0.88 +0.8 698,631 + SMc03000 0.88 -1.7 698,632 - SMc03000 0.88 +0.1 698,632 - SMc03000 0.88 -0.4 698,889 + SMc03001 0.14 +1.3 699,040 - SMc03001 0.29 +0.0 699,264 + SMc03001 0.51 -0.4 699,264 + SMc03001 0.51 +1.0 699,264 + SMc03001 0.51 +0.2 699,264 + SMc03001 0.51 +1.0 699,265 - SMc03001 0.51 +2.0 699,321 + SMc03001 0.57 -0.8 699,363 + SMc03001 0.61 -0.7 699,399 + SMc03001 0.64 -1.3
Or see this region's nucleotide sequence