Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5862

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5861 and Pf1N1B4_5862 are separated by 52 nucleotidesPf1N1B4_5862 and Pf1N1B4_5863 overlap by 1 nucleotides Pf1N1B4_5861 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 295,362 to 296,288 _5861 Pf1N1B4_5862 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 296,341 to 297,840 _5862 Pf1N1B4_5863 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 297,840 to 298,889 _5863 Position (kb) 296 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 295.440 kb on + strandat 295.441 kb on - strandat 295.575 kb on + strand, within Pf1N1B4_5861at 295.641 kb on - strand, within Pf1N1B4_5861at 295.756 kb on + strand, within Pf1N1B4_5861at 295.757 kb on - strand, within Pf1N1B4_5861at 295.826 kb on + strand, within Pf1N1B4_5861at 295.944 kb on + strand, within Pf1N1B4_5861at 295.950 kb on + strandat 296.768 kb on - strand, within Pf1N1B4_5862at 296.854 kb on + strand, within Pf1N1B4_5862at 296.867 kb on + strand, within Pf1N1B4_5862at 296.868 kb on - strand, within Pf1N1B4_5862at 297.395 kb on - strand, within Pf1N1B4_5862at 297.513 kb on + strand, within Pf1N1B4_5862at 297.514 kb on - strand, within Pf1N1B4_5862at 298.003 kb on - strand, within Pf1N1B4_5863at 298.003 kb on - strand, within Pf1N1B4_5863at 298.306 kb on - strand, within Pf1N1B4_5863at 298.554 kb on + strandat 298.583 kb on - strand, within Pf1N1B4_5863at 298.583 kb on - strand, within Pf1N1B4_5863

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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295,440 + -1.4
295,441 - +1.6
295,575 + Pf1N1B4_5861 0.23 +0.6
295,641 - Pf1N1B4_5861 0.30 -0.1
295,756 + Pf1N1B4_5861 0.43 +0.1
295,757 - Pf1N1B4_5861 0.43 +0.4
295,826 + Pf1N1B4_5861 0.50 +0.4
295,944 + Pf1N1B4_5861 0.63 +0.6
295,950 + +1.2
296,768 - Pf1N1B4_5862 0.28 -0.4
296,854 + Pf1N1B4_5862 0.34 +0.2
296,867 + Pf1N1B4_5862 0.35 +3.0
296,868 - Pf1N1B4_5862 0.35 -0.2
297,395 - Pf1N1B4_5862 0.70 +2.0
297,513 + Pf1N1B4_5862 0.78 +0.8
297,514 - Pf1N1B4_5862 0.78 +1.5
298,003 - Pf1N1B4_5863 0.16 +0.2
298,003 - Pf1N1B4_5863 0.16 -0.4
298,306 - Pf1N1B4_5863 0.44 -0.4
298,554 + -0.4
298,583 - Pf1N1B4_5863 0.71 +0.4
298,583 - Pf1N1B4_5863 0.71 -2.9

Or see this region's nucleotide sequence