Strain Fitness in Escherichia coli BL21 around ECD_03078

Experiment: Mixed culture, Halobacteriovorax-10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-10
3,226,812	+		ECD_03077	0.81	-1.0
3,226,822	+		ECD_03077	0.81	-1.3
3,226,822	+		ECD_03077	0.81	-1.3
3,226,822	+		ECD_03077	0.81	-1.1
3,226,977	+		ECD_03077	0.84	-1.8
3,227,019	+		ECD_03077	0.85	-0.9
3,227,029	+		ECD_03077	0.86	-0.8
3,227,089	+		ECD_03077	0.87	-0.6
3,227,090	-		ECD_03077	0.87	-1.4
3,227,113	+		ECD_03077	0.87	-1.1
3,227,142	-		ECD_03077	0.88	-1.4
3,227,215	+		ECD_03077	0.90	-0.8
3,227,278	-				-1.2
3,227,289	+				-1.5
3,227,290	-				-2.0
3,227,300	+				-0.8
3,227,300	+				+0.5
3,227,300	+				-1.3
3,227,301	-				-1.2
3,227,301	-				-1.7
3,227,330	-				-1.4
3,227,331	+				-0.2
3,227,331	+				-1.3
3,227,331	+				-1.6
3,227,331	+				-1.7
3,227,331	+				-1.4
3,227,332	-				-0.9
3,227,332	-				-1.5
3,227,332	-				-0.7
3,227,332	-				-0.8
3,227,332	-				-0.6
3,227,407	+				-1.0
3,227,407	+				-0.9
3,227,468	+				-1.2
3,227,468	+				-1.8
3,227,468	+				-1.4
3,227,514	+				-0.6
3,227,515	-				-0.6
3,227,535	+				-1.3
3,227,536	-				-2.6
3,227,589	+				-1.3
3,227,624	+				-1.5
3,227,624	+				+0.2
3,227,887	+		ECD_03078	0.13	-0.9
3,227,887	+		ECD_03078	0.13	-2.0
3,227,887	+		ECD_03078	0.13	-0.9
3,227,887	+		ECD_03078	0.13	-1.3
3,227,888	-		ECD_03078	0.13	-1.3
3,227,888	-		ECD_03078	0.13	-0.9
3,227,888	-		ECD_03078	0.13	-1.0
3,228,070	+		ECD_03078	0.26	-1.2
3,228,071	-		ECD_03078	0.26	-0.1
3,228,071	-		ECD_03078	0.26	-0.7
3,228,071	-		ECD_03078	0.26	-1.3
3,228,072	+		ECD_03078	0.26	-2.3
3,228,072	+		ECD_03078	0.26	-1.3
3,228,073	-		ECD_03078	0.26	-1.3
3,228,073	-		ECD_03078	0.26	-1.3
3,228,422	-		ECD_03078	0.51	-0.8
3,228,422	-		ECD_03078	0.51	-1.0
3,228,422	-		ECD_03078	0.51	-0.7
3,228,470	-		ECD_03078	0.54	-1.0
3,228,509	+		ECD_03078	0.57	-1.5
3,228,509	+		ECD_03078	0.57	-1.1
3,228,640	-		ECD_03078	0.66	-1.7
3,228,716	+		ECD_03078	0.72	-1.3
3,228,717	-		ECD_03078	0.72	-1.2
3,228,717	-		ECD_03078	0.72	-2.3
3,228,717	-		ECD_03078	0.72	-0.3
3,228,791	+		ECD_03078	0.77	-1.0
3,228,796	-		ECD_03078	0.77	-1.1
3,228,861	+		ECD_03078	0.82	-0.8
3,228,861	+		ECD_03078	0.82	-1.6
3,228,861	+		ECD_03078	0.82	-0.3
3,228,861	+		ECD_03078	0.82	-1.4
3,228,862	-		ECD_03078	0.82	-1.2
3,228,862	-		ECD_03078	0.82	-1.1
3,229,093	-				-0.7
3,229,095	+				-0.7
3,229,096	-				-1.1
3,229,096	-				-0.4
3,229,212	+				+0.0
3,229,213	-				-0.3
3,229,213	-				+0.1
3,229,216	-				-0.4
3,229,254	+				+0.8
3,229,254	+				+0.0
3,229,284	+				-0.7
3,229,285	-				+0.0
3,229,286	+				-0.5
3,229,298	+				+0.2
3,229,356	+		ECD_03079	0.12	-0.4
3,229,395	+		ECD_03079	0.20	+0.6
3,229,395	+		ECD_03079	0.20	-0.1
3,229,395	+		ECD_03079	0.20	-1.2
3,229,395	+		ECD_03079	0.20	+0.0
3,229,423	+		ECD_03079	0.26	-0.0
3,229,423	+		ECD_03079	0.26	+0.1
3,229,423	+		ECD_03079	0.26	+0.3
3,229,424	-		ECD_03079	0.26	-0.1
3,229,527	-		ECD_03079	0.47	+0.8
3,229,531	+		ECD_03079	0.48	+0.0
3,229,532	-		ECD_03079	0.48	-1.0
3,229,532	-		ECD_03079	0.48	+0.5
3,229,532	-		ECD_03079	0.48	-0.5
3,229,532	-		ECD_03079	0.48	+0.1
3,229,532	-		ECD_03079	0.48	+0.0
3,229,750	+				+0.2
3,229,763	+				+0.1
3,229,764	-				-0.3
3,229,764	-				+1.1
3,229,802	+		ECD_03080	0.12	-0.2
3,229,802	+		ECD_03080	0.12	+0.3
3,229,821	+		ECD_03080	0.18	+0.3
3,229,822	-		ECD_03080	0.18	+0.1
3,229,822	-		ECD_03080	0.18	+0.4
3,229,999	+		ECD_03080	0.70	+0.1
3,230,006	-		ECD_03080	0.72	-0.1
3,230,006	-		ECD_03080	0.72	+0.2
3,230,006	-		ECD_03080	0.72	-0.3
3,230,053	+		ECD_03080	0.86	-0.0
3,230,053	+		ECD_03080	0.86	-0.0
3,230,053	+		ECD_03080	0.86	-0.3
3,230,055	+		ECD_03080	0.86	+0.1
3,230,057	+		ECD_03080	0.87	+0.4
3,230,057	+		ECD_03080	0.87	+0.4
3,230,057	+		ECD_03080	0.87	-0.0
3,230,057	+		ECD_03080	0.87	-0.0
3,230,057	+		ECD_03080	0.87	+0.3
3,230,057	+		ECD_03080	0.87	+0.3
3,230,058	-		ECD_03080	0.87	-0.1
3,230,058	-		ECD_03080	0.87	+0.3
3,230,058	-		ECD_03080	0.87	+0.3
3,230,063	-		ECD_03080	0.89	+0.2
3,230,075	-				-0.1
3,230,079	+				+0.2
3,230,087	+				+0.7