Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2626

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2624 and GFF2625 are separated by 270 nucleotidesGFF2625 and GFF2626 are separated by 24 nucleotidesGFF2626 and GFF2627 overlap by 4 nucleotidesGFF2627 and GFF2628 are separated by 136 nucleotides GFF2624 - Putative periplasmic binding protein, at 149,509 to 150,270 GFF2624 GFF2625 - Putative ABC amino acid transporter permease, at 150,541 to 150,924 GFF2625 GFF2626 - ABC transporter ATP-binding subunit, at 150,949 to 151,680 GFF2626 GFF2627 - putative amino acid ABC transporter, at 151,677 to 152,357 GFF2627 GFF2628 - putative membrane protein, at 152,494 to 154,044 GFF2628 Position (kb) 150 151 152Strain fitness (log2 ratio) -1 0 1at 150.268 kb on + strandat 150.761 kb on - strand, within GFF2625at 150.978 kb on + strandat 151.263 kb on + strand, within GFF2626at 151.264 kb on - strand, within GFF2626at 151.307 kb on + strand, within GFF2626at 151.341 kb on + strand, within GFF2626at 151.557 kb on - strand, within GFF2626at 152.098 kb on + strand, within GFF2627at 152.279 kb on + strand, within GFF2627at 152.324 kb on + strandat 152.324 kb on + strandat 152.554 kb on - strandat 152.594 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
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150,268 + +0.0
150,761 - GFF2625 0.57 +0.8
150,978 + -0.0
151,263 + GFF2626 0.43 -0.3
151,264 - GFF2626 0.43 -0.4
151,307 + GFF2626 0.49 -0.0
151,341 + GFF2626 0.54 -1.2
151,557 - GFF2626 0.83 -0.5
152,098 + GFF2627 0.62 +0.1
152,279 + GFF2627 0.88 -0.5
152,324 + +0.1
152,324 + +0.1
152,554 - +0.2
152,594 + +0.5

Or see this region's nucleotide sequence