Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00860 and ABID97_RS00865 are separated by 99 nucleotides ABID97_RS00865 and ABID97_RS00870 overlap by 4 nucleotides
ABID97_RS00860: ABID97_RS00860 - DUF6600 domain-containing protein, at 171,938 to 173,929
_RS00860
ABID97_RS00865: ABID97_RS00865 - glutathione-disulfide reductase, at 174,029 to 175,387
_RS00865
ABID97_RS00870: ABID97_RS00870 - 2-dehydropantoate 2-reductase, at 175,384 to 176,292
_RS00870
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 173.081 kb on + strand, within ABID97_RS00860 at 173.081 kb on + strand, within ABID97_RS00860 at 173.081 kb on + strand, within ABID97_RS00860 at 173.082 kb on - strand, within ABID97_RS00860 at 173.082 kb on - strand, within ABID97_RS00860 at 173.082 kb on - strand, within ABID97_RS00860 at 173.310 kb on - strand, within ABID97_RS00860 at 173.310 kb on - strand, within ABID97_RS00860 at 174.189 kb on - strand, within ABID97_RS00865 at 174.326 kb on + strand, within ABID97_RS00865 at 174.326 kb on + strand, within ABID97_RS00865 at 174.326 kb on + strand, within ABID97_RS00865 at 174.326 kb on + strand, within ABID97_RS00865 at 174.327 kb on - strand, within ABID97_RS00865 at 174.327 kb on - strand, within ABID97_RS00865 at 174.560 kb on + strand, within ABID97_RS00865 at 174.560 kb on + strand, within ABID97_RS00865 at 174.561 kb on - strand, within ABID97_RS00865 at 174.923 kb on + strand, within ABID97_RS00865 at 174.924 kb on - strand, within ABID97_RS00865 at 174.924 kb on - strand, within ABID97_RS00865 at 175.553 kb on + strand, within ABID97_RS00870 at 175.553 kb on + strand, within ABID97_RS00870 at 175.554 kb on - strand, within ABID97_RS00870 at 175.919 kb on + strand, within ABID97_RS00870 at 175.919 kb on + strand, within ABID97_RS00870 at 176.249 kb on + strand at 176.253 kb on - strand at 176.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 173,081 + ABID97_RS00860 0.57 +2.2 173,081 + ABID97_RS00860 0.57 +0.0 173,081 + ABID97_RS00860 0.57 +0.6 173,082 - ABID97_RS00860 0.57 +1.3 173,082 - ABID97_RS00860 0.57 +0.7 173,082 - ABID97_RS00860 0.57 -0.3 173,310 - ABID97_RS00860 0.69 +0.4 173,310 - ABID97_RS00860 0.69 +4.4 174,189 - ABID97_RS00865 0.12 +0.0 174,326 + ABID97_RS00865 0.22 +0.3 174,326 + ABID97_RS00865 0.22 -0.3 174,326 + ABID97_RS00865 0.22 -0.2 174,326 + ABID97_RS00865 0.22 +1.2 174,327 - ABID97_RS00865 0.22 -0.3 174,327 - ABID97_RS00865 0.22 +0.8 174,560 + ABID97_RS00865 0.39 -1.9 174,560 + ABID97_RS00865 0.39 +0.4 174,561 - ABID97_RS00865 0.39 -2.8 174,923 + ABID97_RS00865 0.66 +2.7 174,924 - ABID97_RS00865 0.66 -0.4 174,924 - ABID97_RS00865 0.66 +0.5 175,553 + ABID97_RS00870 0.19 -0.7 175,553 + ABID97_RS00870 0.19 +0.9 175,554 - ABID97_RS00870 0.19 -0.7 175,919 + ABID97_RS00870 0.59 -0.2 175,919 + ABID97_RS00870 0.59 -0.3 176,249 + -1.1 176,253 - -0.4 176,384 - +0.2
Or see this region's nucleotide sequence