Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF688

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF686 and GFF687 are separated by 2 nucleotidesGFF687 and GFF688 overlap by 1 nucleotidesGFF688 and GFF689 overlap by 4 nucleotidesGFF689 and GFF690 are separated by 132 nucleotides GFF686 - Putative inner membrane protein, at 42,651 to 43,211 GFF686 GFF687 - Inner membrane protein YbhQ, at 43,214 to 44,176 GFF687 GFF688 - Cardiolipin synthetase (EC 2.7.8.-), at 44,176 to 45,417 GFF688 GFF689 - Endonuclease/Exonuclease/phosphatase family protein, at 45,414 to 46,172 GFF689 GFF690 - Putative inner membrane protein, at 46,305 to 46,715 GFF690 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1 2 3at 43.363 kb on + strand, within GFF687at 43.363 kb on + strand, within GFF687at 43.609 kb on + strand, within GFF687at 43.610 kb on - strand, within GFF687at 43.644 kb on + strand, within GFF687at 43.645 kb on - strand, within GFF687at 43.645 kb on - strand, within GFF687at 43.654 kb on + strand, within GFF687at 43.738 kb on + strand, within GFF687at 43.763 kb on - strand, within GFF687at 43.783 kb on + strand, within GFF687at 43.810 kb on + strand, within GFF687at 43.813 kb on + strand, within GFF687at 43.814 kb on - strand, within GFF687at 43.839 kb on + strand, within GFF687at 43.900 kb on - strand, within GFF687at 43.996 kb on + strand, within GFF687at 44.022 kb on - strand, within GFF687at 44.171 kb on - strandat 44.171 kb on - strandat 44.269 kb on - strandat 44.367 kb on + strand, within GFF688at 44.367 kb on + strand, within GFF688at 44.367 kb on + strand, within GFF688at 44.367 kb on + strand, within GFF688at 44.368 kb on - strand, within GFF688at 44.368 kb on - strand, within GFF688at 44.368 kb on - strand, within GFF688at 44.368 kb on - strand, within GFF688at 44.410 kb on + strand, within GFF688at 44.574 kb on - strand, within GFF688at 44.604 kb on + strand, within GFF688at 44.605 kb on - strand, within GFF688at 44.979 kb on - strand, within GFF688at 45.013 kb on - strand, within GFF688at 45.013 kb on - strand, within GFF688at 45.031 kb on - strand, within GFF688at 45.031 kb on - strand, within GFF688at 45.051 kb on + strand, within GFF688at 45.097 kb on - strand, within GFF688at 45.215 kb on - strand, within GFF688at 45.217 kb on + strand, within GFF688at 45.217 kb on + strand, within GFF688at 45.217 kb on + strand, within GFF688at 45.230 kb on - strand, within GFF688at 45.518 kb on + strand, within GFF689at 45.519 kb on - strand, within GFF689at 45.589 kb on - strand, within GFF689at 45.712 kb on - strand, within GFF689at 45.712 kb on - strand, within GFF689at 45.751 kb on - strand, within GFF689at 45.802 kb on + strand, within GFF689at 45.907 kb on + strand, within GFF689at 46.208 kb on - strandat 46.208 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
remove
43,363 + GFF687 0.15 -0.2
43,363 + GFF687 0.15 +0.3
43,609 + GFF687 0.41 -0.6
43,610 - GFF687 0.41 -0.3
43,644 + GFF687 0.45 +0.3
43,645 - GFF687 0.45 -0.3
43,645 - GFF687 0.45 +0.2
43,654 + GFF687 0.46 +0.2
43,738 + GFF687 0.54 +0.1
43,763 - GFF687 0.57 +0.3
43,783 + GFF687 0.59 -0.0
43,810 + GFF687 0.62 -0.0
43,813 + GFF687 0.62 +2.6
43,814 - GFF687 0.62 -0.4
43,839 + GFF687 0.65 -1.6
43,900 - GFF687 0.71 -0.2
43,996 + GFF687 0.81 -0.4
44,022 - GFF687 0.84 +0.2
44,171 - +1.8
44,171 - -0.1
44,269 - +1.0
44,367 + GFF688 0.15 +0.0
44,367 + GFF688 0.15 -0.3
44,367 + GFF688 0.15 +0.5
44,367 + GFF688 0.15 -0.0
44,368 - GFF688 0.15 -0.1
44,368 - GFF688 0.15 +0.3
44,368 - GFF688 0.15 +0.3
44,368 - GFF688 0.15 +0.2
44,410 + GFF688 0.19 +0.5
44,574 - GFF688 0.32 +1.1
44,604 + GFF688 0.34 +0.5
44,605 - GFF688 0.35 +0.3
44,979 - GFF688 0.65 -0.0
45,013 - GFF688 0.67 +0.9
45,013 - GFF688 0.67 +0.3
45,031 - GFF688 0.69 +0.2
45,031 - GFF688 0.69 -0.3
45,051 + GFF688 0.70 -1.7
45,097 - GFF688 0.74 +0.2
45,215 - GFF688 0.84 +0.9
45,217 + GFF688 0.84 -0.9
45,217 + GFF688 0.84 +0.2
45,217 + GFF688 0.84 +0.7
45,230 - GFF688 0.85 +0.2
45,518 + GFF689 0.14 -1.5
45,519 - GFF689 0.14 +0.2
45,589 - GFF689 0.23 -0.3
45,712 - GFF689 0.39 +0.1
45,712 - GFF689 0.39 -0.7
45,751 - GFF689 0.44 +3.3
45,802 + GFF689 0.51 -0.5
45,907 + GFF689 0.65 +0.4
46,208 - +1.0
46,208 - -0.5

Or see this region's nucleotide sequence