Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27735

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27730 and AO356_27735 are separated by 15 nucleotidesAO356_27735 and AO356_27740 are separated by 428 nucleotides AO356_27730: AO356_27730 - ATP-dependent DNA ligase, at 6,330,240 to 6,332,228 _27730 AO356_27735: AO356_27735 - aspartyl beta-hydroxylase, at 6,332,244 to 6,333,143 _27735 AO356_27740: AO356_27740 - ABC transporter ATP-binding protein, at 6,333,572 to 6,335,137 _27740 Position (kb) 6332 6333 6334Strain fitness (log2 ratio) -2 -1 0 1 2at 6331.282 kb on + strand, within AO356_27730at 6331.413 kb on + strand, within AO356_27730at 6331.413 kb on + strand, within AO356_27730at 6331.413 kb on + strand, within AO356_27730at 6331.413 kb on + strand, within AO356_27730at 6331.413 kb on + strand, within AO356_27730at 6331.414 kb on - strand, within AO356_27730at 6331.414 kb on - strand, within AO356_27730at 6331.414 kb on - strand, within AO356_27730at 6331.414 kb on - strand, within AO356_27730at 6331.417 kb on - strand, within AO356_27730at 6331.417 kb on - strand, within AO356_27730at 6331.978 kb on - strand, within AO356_27730at 6331.978 kb on - strand, within AO356_27730at 6332.023 kb on + strand, within AO356_27730at 6332.024 kb on - strand, within AO356_27730at 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.109 kb on + strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.110 kb on - strandat 6332.160 kb on + strandat 6332.161 kb on - strandat 6332.299 kb on + strandat 6332.300 kb on - strandat 6332.300 kb on - strandat 6332.300 kb on - strandat 6332.302 kb on + strandat 6332.303 kb on - strandat 6332.433 kb on - strand, within AO356_27735at 6332.537 kb on - strand, within AO356_27735at 6332.537 kb on - strand, within AO356_27735at 6332.611 kb on + strand, within AO356_27735at 6332.611 kb on + strand, within AO356_27735at 6332.611 kb on + strand, within AO356_27735at 6332.612 kb on - strand, within AO356_27735at 6332.657 kb on - strand, within AO356_27735at 6332.803 kb on + strand, within AO356_27735at 6332.815 kb on + strand, within AO356_27735at 6332.866 kb on + strand, within AO356_27735at 6333.010 kb on + strand, within AO356_27735at 6333.011 kb on - strand, within AO356_27735at 6333.011 kb on - strand, within AO356_27735at 6333.071 kb on + strandat 6333.071 kb on + strandat 6333.071 kb on + strandat 6333.118 kb on + strandat 6333.118 kb on + strandat 6333.119 kb on - strandat 6333.321 kb on - strandat 6333.337 kb on - strandat 6333.337 kb on - strandat 6333.337 kb on - strandat 6333.382 kb on + strandat 6333.382 kb on + strandat 6333.408 kb on + strandat 6333.408 kb on + strandat 6333.424 kb on + strandat 6333.491 kb on + strandat 6333.491 kb on + strandat 6333.492 kb on - strandat 6333.492 kb on - strandat 6333.502 kb on + strandat 6333.502 kb on + strandat 6333.502 kb on + strandat 6333.503 kb on - strandat 6333.503 kb on - strandat 6333.516 kb on + strandat 6333.516 kb on + strandat 6333.516 kb on + strandat 6333.516 kb on + strandat 6333.520 kb on + strandat 6333.521 kb on - strandat 6333.556 kb on + strandat 6333.562 kb on + strandat 6333.563 kb on - strandat 6333.563 kb on - strandat 6333.854 kb on + strand, within AO356_27740at 6333.854 kb on + strand, within AO356_27740at 6333.854 kb on + strand, within AO356_27740at 6333.855 kb on - strand, within AO356_27740at 6333.855 kb on - strand, within AO356_27740at 6333.855 kb on - strand, within AO356_27740at 6333.932 kb on + strand, within AO356_27740

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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6,331,282 + AO356_27730 0.52 +1.0
6,331,413 + AO356_27730 0.59 +0.0
6,331,413 + AO356_27730 0.59 +0.2
6,331,413 + AO356_27730 0.59 +0.2
6,331,413 + AO356_27730 0.59 -0.2
6,331,413 + AO356_27730 0.59 +0.3
6,331,414 - AO356_27730 0.59 -0.9
6,331,414 - AO356_27730 0.59 -0.7
6,331,414 - AO356_27730 0.59 -1.6
6,331,414 - AO356_27730 0.59 -0.1
6,331,417 - AO356_27730 0.59 -0.5
6,331,417 - AO356_27730 0.59 -0.7
6,331,978 - AO356_27730 0.87 +1.9
6,331,978 - AO356_27730 0.87 -0.7
6,332,023 + AO356_27730 0.90 +1.4
6,332,024 - AO356_27730 0.90 -0.2
6,332,109 + -0.2
6,332,109 + -0.4
6,332,109 + +0.1
6,332,109 + +0.3
6,332,109 + +0.5
6,332,109 + +0.4
6,332,109 + +0.2
6,332,109 + +1.4
6,332,109 + -0.2
6,332,109 + -1.1
6,332,109 + +0.5
6,332,109 + -0.2
6,332,109 + +1.5
6,332,110 - +1.7
6,332,110 - -0.5
6,332,110 - +0.1
6,332,110 - +0.3
6,332,110 - +0.2
6,332,110 - -2.3
6,332,110 - +0.5
6,332,110 - +0.2
6,332,110 - +0.6
6,332,110 - +0.8
6,332,110 - +1.0
6,332,110 - -0.5
6,332,160 + +0.6
6,332,161 - -0.4
6,332,299 + -0.5
6,332,300 - +0.1
6,332,300 - +0.9
6,332,300 - -1.4
6,332,302 + -0.5
6,332,303 - -0.1
6,332,433 - AO356_27735 0.21 -0.1
6,332,537 - AO356_27735 0.33 +0.4
6,332,537 - AO356_27735 0.33 +0.8
6,332,611 + AO356_27735 0.41 +1.6
6,332,611 + AO356_27735 0.41 +0.1
6,332,611 + AO356_27735 0.41 -0.9
6,332,612 - AO356_27735 0.41 +1.0
6,332,657 - AO356_27735 0.46 -0.1
6,332,803 + AO356_27735 0.62 -2.2
6,332,815 + AO356_27735 0.63 -0.2
6,332,866 + AO356_27735 0.69 +0.8
6,333,010 + AO356_27735 0.85 +1.4
6,333,011 - AO356_27735 0.85 -0.8
6,333,011 - AO356_27735 0.85 -0.2
6,333,071 + -0.5
6,333,071 + +0.7
6,333,071 + -1.7
6,333,118 + +0.9
6,333,118 + -2.5
6,333,119 - +1.8
6,333,321 - +0.2
6,333,337 - +1.4
6,333,337 - -1.1
6,333,337 - -0.3
6,333,382 + -1.3
6,333,382 + +0.8
6,333,408 + -0.4
6,333,408 + +0.2
6,333,424 + -0.1
6,333,491 + -0.9
6,333,491 + +0.0
6,333,492 - +1.6
6,333,492 - -0.7
6,333,502 + -1.2
6,333,502 + +1.0
6,333,502 + +0.4
6,333,503 - -0.6
6,333,503 - +0.6
6,333,516 + +0.9
6,333,516 + +0.8
6,333,516 + -0.9
6,333,516 + +0.7
6,333,520 + +1.5
6,333,521 - +0.0
6,333,556 + -0.3
6,333,562 + -0.5
6,333,563 - +1.1
6,333,563 - +0.6
6,333,854 + AO356_27740 0.18 +0.7
6,333,854 + AO356_27740 0.18 +0.3
6,333,854 + AO356_27740 0.18 -0.1
6,333,855 - AO356_27740 0.18 +0.3
6,333,855 - AO356_27740 0.18 -0.5
6,333,855 - AO356_27740 0.18 +1.0
6,333,932 + AO356_27740 0.23 -0.5

Or see this region's nucleotide sequence