Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17110

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17105 and AO356_17110 are separated by 207 nucleotidesAO356_17110 and AO356_17115 are separated by 736 nucleotides AO356_17105: AO356_17105 - hypothetical protein, at 3,848,698 to 3,850,509 _17105 AO356_17110: AO356_17110 - methyltransferase, at 3,850,717 to 3,851,589 _17110 AO356_17115: AO356_17115 - division/cell wall cluster transcriptional repressor MraZ, at 3,852,326 to 3,852,781 _17115 Position (kb) 3850 3851 3852Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.511 kb on + strandat 3850.512 kb on - strandat 3850.512 kb on - strandat 3850.512 kb on - strandat 3850.512 kb on - strandat 3850.512 kb on - strandat 3850.525 kb on - strandat 3850.525 kb on - strandat 3850.550 kb on + strandat 3850.578 kb on + strandat 3850.578 kb on + strandat 3850.578 kb on + strandat 3850.579 kb on - strandat 3850.579 kb on - strandat 3850.579 kb on - strandat 3850.579 kb on - strandat 3850.579 kb on - strandat 3850.601 kb on - strandat 3850.604 kb on + strandat 3850.604 kb on + strandat 3850.604 kb on + strandat 3850.640 kb on + strandat 3850.640 kb on + strandat 3850.663 kb on + strandat 3850.682 kb on - strandat 3850.696 kb on + strandat 3850.696 kb on + strandat 3850.697 kb on - strandat 3850.759 kb on + strandat 3850.759 kb on + strandat 3850.759 kb on + strandat 3850.759 kb on + strandat 3850.759 kb on + strandat 3850.760 kb on - strandat 3850.760 kb on - strandat 3850.760 kb on - strandat 3850.760 kb on - strandat 3850.795 kb on - strandat 3850.795 kb on - strandat 3850.947 kb on + strand, within AO356_17110at 3850.947 kb on + strand, within AO356_17110at 3850.947 kb on + strand, within AO356_17110at 3850.948 kb on - strand, within AO356_17110at 3850.948 kb on - strand, within AO356_17110at 3851.055 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.190 kb on + strand, within AO356_17110at 3851.191 kb on - strand, within AO356_17110at 3851.191 kb on - strand, within AO356_17110at 3851.191 kb on - strand, within AO356_17110at 3851.192 kb on + strand, within AO356_17110at 3851.192 kb on + strand, within AO356_17110at 3851.193 kb on - strand, within AO356_17110at 3851.221 kb on + strand, within AO356_17110at 3851.221 kb on + strand, within AO356_17110at 3851.221 kb on + strand, within AO356_17110at 3851.222 kb on - strand, within AO356_17110at 3851.222 kb on - strand, within AO356_17110at 3851.222 kb on - strand, within AO356_17110at 3851.222 kb on - strand, within AO356_17110at 3851.222 kb on - strand, within AO356_17110at 3851.554 kb on + strandat 3851.554 kb on + strandat 3851.555 kb on - strandat 3851.555 kb on - strandat 3851.555 kb on - strandat 3851.620 kb on + strandat 3851.620 kb on + strandat 3851.620 kb on + strandat 3851.621 kb on - strandat 3852.082 kb on - strandat 3852.194 kb on + strandat 3852.194 kb on + strandat 3852.195 kb on - strandat 3852.245 kb on + strandat 3852.245 kb on + strandat 3852.245 kb on + strandat 3852.245 kb on + strandat 3852.296 kb on + strandat 3852.340 kb on + strandat 3852.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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3,850,511 + +1.2
3,850,511 + -0.2
3,850,511 + +1.1
3,850,511 + +0.6
3,850,511 + +0.2
3,850,511 + +0.5
3,850,511 + -1.0
3,850,511 + +1.3
3,850,511 + +0.4
3,850,511 + -0.5
3,850,511 + +0.9
3,850,511 + -1.2
3,850,511 + -0.8
3,850,512 - +0.4
3,850,512 - +0.1
3,850,512 - -0.2
3,850,512 - +1.3
3,850,512 - +1.1
3,850,525 - -0.1
3,850,525 - +0.2
3,850,550 + -0.1
3,850,578 + -0.2
3,850,578 + -1.5
3,850,578 + +1.3
3,850,579 - -0.2
3,850,579 - +1.0
3,850,579 - -0.1
3,850,579 - +0.6
3,850,579 - -0.7
3,850,601 - -1.3
3,850,604 + +0.2
3,850,604 + -0.1
3,850,604 + +0.4
3,850,640 + +1.4
3,850,640 + +0.3
3,850,663 + +0.1
3,850,682 - -1.4
3,850,696 + +0.8
3,850,696 + +1.1
3,850,697 - +1.6
3,850,759 + +0.3
3,850,759 + +2.7
3,850,759 + +1.5
3,850,759 + +1.4
3,850,759 + +1.1
3,850,760 - -0.3
3,850,760 - +1.5
3,850,760 - +2.3
3,850,760 - -0.6
3,850,795 - -1.5
3,850,795 - +0.1
3,850,947 + AO356_17110 0.26 +0.1
3,850,947 + AO356_17110 0.26 +0.8
3,850,947 + AO356_17110 0.26 +1.0
3,850,948 - AO356_17110 0.26 +1.9
3,850,948 - AO356_17110 0.26 +0.9
3,851,055 + AO356_17110 0.39 +0.2
3,851,190 + AO356_17110 0.54 +1.7
3,851,190 + AO356_17110 0.54 +1.3
3,851,190 + AO356_17110 0.54 +1.4
3,851,190 + AO356_17110 0.54 +0.9
3,851,190 + AO356_17110 0.54 +0.7
3,851,190 + AO356_17110 0.54 +0.1
3,851,190 + AO356_17110 0.54 +0.4
3,851,190 + AO356_17110 0.54 +1.4
3,851,190 + AO356_17110 0.54 +0.2
3,851,190 + AO356_17110 0.54 +1.4
3,851,190 + AO356_17110 0.54 +0.5
3,851,191 - AO356_17110 0.54 +0.8
3,851,191 - AO356_17110 0.54 -1.9
3,851,191 - AO356_17110 0.54 -0.0
3,851,192 + AO356_17110 0.54 +1.1
3,851,192 + AO356_17110 0.54 +2.8
3,851,193 - AO356_17110 0.55 +0.5
3,851,221 + AO356_17110 0.58 +0.5
3,851,221 + AO356_17110 0.58 +0.5
3,851,221 + AO356_17110 0.58 +0.5
3,851,222 - AO356_17110 0.58 +1.2
3,851,222 - AO356_17110 0.58 -1.0
3,851,222 - AO356_17110 0.58 +1.4
3,851,222 - AO356_17110 0.58 +1.4
3,851,222 - AO356_17110 0.58 -0.3
3,851,554 + +1.3
3,851,554 + +0.4
3,851,555 - +0.2
3,851,555 - +1.7
3,851,555 - -0.1
3,851,620 + -0.7
3,851,620 + -1.0
3,851,620 + -1.0
3,851,621 - -0.8
3,852,082 - -1.0
3,852,194 + +0.7
3,852,194 + +1.8
3,852,195 - -1.3
3,852,245 + -2.3
3,852,245 + +2.8
3,852,245 + -1.7
3,852,245 + -0.7
3,852,296 + +0.5
3,852,340 + -0.6
3,852,346 + +0.3

Or see this region's nucleotide sequence