Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03985

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03975 and AO356_03980 are separated by 99 nucleotidesAO356_03980 and AO356_03985 overlap by 1 nucleotidesAO356_03985 and AO356_03990 are separated by 195 nucleotidesAO356_03990 and AO356_03995 are separated by 119 nucleotides AO356_03975: AO356_03975 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data), at 886,068 to 886,853 _03975 AO356_03980: AO356_03980 - pterin-4-alpha-carbinolamine dehydratase, at 886,953 to 887,309 _03980 AO356_03985: AO356_03985 - L-phenylalanine transaminase (EC 2.6.1.57) (from data), at 887,309 to 888,502 _03985 AO356_03990: AO356_03990 - nitroreductase, at 888,698 to 889,261 _03990 AO356_03995: AO356_03995 - potassium transporter TrkH, at 889,381 to 890,835 _03995 Position (kb) 887 888 889Strain fitness (log2 ratio) -2 -1 0 1 2at 886.379 kb on + strand, within AO356_03975at 886.379 kb on + strand, within AO356_03975at 886.379 kb on + strand, within AO356_03975at 886.380 kb on - strand, within AO356_03975at 886.404 kb on + strand, within AO356_03975at 886.491 kb on + strand, within AO356_03975at 886.492 kb on - strand, within AO356_03975at 886.533 kb on + strand, within AO356_03975at 886.534 kb on - strand, within AO356_03975at 886.534 kb on - strand, within AO356_03975at 886.548 kb on + strand, within AO356_03975at 886.602 kb on + strand, within AO356_03975at 886.602 kb on + strand, within AO356_03975at 886.603 kb on - strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.642 kb on - strand, within AO356_03975at 886.865 kb on + strandat 886.865 kb on + strandat 886.932 kb on + strandat 886.933 kb on - strandat 886.933 kb on - strandat 887.308 kb on - strandat 887.308 kb on - strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.418 kb on - strandat 887.418 kb on - strandat 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.508 kb on + strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.679 kb on + strand, within AO356_03985at 887.680 kb on - strand, within AO356_03985at 887.756 kb on + strand, within AO356_03985at 887.756 kb on + strand, within AO356_03985at 887.757 kb on - strand, within AO356_03985at 887.770 kb on + strand, within AO356_03985at 887.770 kb on + strand, within AO356_03985at 887.835 kb on + strand, within AO356_03985at 887.835 kb on + strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985at 887.948 kb on + strand, within AO356_03985at 888.357 kb on - strand, within AO356_03985at 888.410 kb on + strandat 888.410 kb on + strandat 888.410 kb on + strandat 888.410 kb on + strandat 888.410 kb on + strandat 888.411 kb on - strandat 888.411 kb on - strandat 888.411 kb on - strandat 888.411 kb on - strandat 888.501 kb on - strandat 888.501 kb on - strandat 888.501 kb on - strandat 888.700 kb on - strandat 888.781 kb on - strand, within AO356_03990at 888.781 kb on - strand, within AO356_03990at 888.843 kb on + strand, within AO356_03990at 888.888 kb on + strand, within AO356_03990at 889.289 kb on + strandat 889.290 kb on - strandat 889.290 kb on - strandat 889.322 kb on + strandat 889.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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886,379 + AO356_03975 0.40 +0.1
886,379 + AO356_03975 0.40 -1.8
886,379 + AO356_03975 0.40 -0.3
886,380 - AO356_03975 0.40 +0.9
886,404 + AO356_03975 0.43 +1.2
886,491 + AO356_03975 0.54 +0.0
886,492 - AO356_03975 0.54 +1.0
886,533 + AO356_03975 0.59 +0.9
886,534 - AO356_03975 0.59 +0.1
886,534 - AO356_03975 0.59 +0.9
886,548 + AO356_03975 0.61 -0.9
886,602 + AO356_03975 0.68 -0.6
886,602 + AO356_03975 0.68 -0.4
886,603 - AO356_03975 0.68 +0.1
886,641 + AO356_03975 0.73 -1.6
886,641 + AO356_03975 0.73 -0.4
886,641 + AO356_03975 0.73 +0.4
886,641 + AO356_03975 0.73 -1.6
886,641 + AO356_03975 0.73 -0.8
886,642 - AO356_03975 0.73 -0.1
886,865 + +1.1
886,865 + +0.0
886,932 + +0.5
886,933 - +1.3
886,933 - +0.0
887,308 - -0.8
887,308 - +2.0
887,417 + +0.3
887,417 + +0.1
887,417 + -0.2
887,417 + +1.2
887,417 + -0.8
887,418 - +0.3
887,418 - -0.2
887,504 + AO356_03985 0.16 +0.1
887,504 + AO356_03985 0.16 +0.9
887,504 + AO356_03985 0.16 +0.5
887,504 + AO356_03985 0.16 -0.2
887,505 - AO356_03985 0.16 -1.1
887,505 - AO356_03985 0.16 +0.5
887,505 - AO356_03985 0.16 +0.2
887,505 - AO356_03985 0.16 -0.6
887,505 - AO356_03985 0.16 +2.7
887,508 + AO356_03985 0.17 -0.4
887,509 - AO356_03985 0.17 -0.1
887,509 - AO356_03985 0.17 -0.3
887,509 - AO356_03985 0.17 -0.1
887,509 - AO356_03985 0.17 -1.7
887,509 - AO356_03985 0.17 +0.8
887,679 + AO356_03985 0.31 +1.2
887,680 - AO356_03985 0.31 -0.6
887,756 + AO356_03985 0.37 -0.0
887,756 + AO356_03985 0.37 -0.0
887,757 - AO356_03985 0.38 +0.4
887,770 + AO356_03985 0.39 -1.1
887,770 + AO356_03985 0.39 +0.9
887,835 + AO356_03985 0.44 +0.9
887,835 + AO356_03985 0.44 -0.0
887,836 - AO356_03985 0.44 -0.3
887,836 - AO356_03985 0.44 +0.3
887,836 - AO356_03985 0.44 +0.3
887,948 + AO356_03985 0.54 +0.8
888,357 - AO356_03985 0.88 -0.8
888,410 + -0.5
888,410 + -0.1
888,410 + +1.7
888,410 + +0.3
888,410 + +0.7
888,411 - -1.1
888,411 - -1.4
888,411 - -1.3
888,411 - -2.2
888,501 - -0.2
888,501 - +1.1
888,501 - +1.3
888,700 - -0.3
888,781 - AO356_03990 0.15 -0.4
888,781 - AO356_03990 0.15 -1.1
888,843 + AO356_03990 0.26 +1.7
888,888 + AO356_03990 0.34 -0.2
889,289 + +0.7
889,290 - +0.5
889,290 - +0.7
889,322 + +1.2
889,323 - +0.6

Or see this region's nucleotide sequence