Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2948 and Shew_2949 are separated by 114 nucleotides Shew_2949 and Shew_2950 overlap by 1 nucleotides Shew_2950 and Shew_2951 are separated by 123 nucleotides
Shew_2948: Shew_2948 - ATPase (RefSeq), at 3,492,164 to 3,494,737
_2948
Shew_2949: Shew_2949 - hypothetical protein (RefSeq), at 3,494,852 to 3,495,571
_2949
Shew_2950: Shew_2950 - RluA family pseudouridine synthase (RefSeq), at 3,495,571 to 3,496,542
_2950
Shew_2951: Shew_2951 - putative lipoprotein (RefSeq), at 3,496,666 to 3,497,424
_2951
Position (kb) 3495
3496
3497 Strain fitness (log2 ratio) -1
0
1 at 3494.734 kb on + strand at 3495.189 kb on + strand, within Shew_2949 at 3495.324 kb on + strand, within Shew_2949 at 3495.358 kb on + strand, within Shew_2949 at 3495.413 kb on - strand, within Shew_2949 at 3495.725 kb on - strand, within Shew_2950 at 3496.412 kb on + strand, within Shew_2950 at 3496.479 kb on + strand at 3496.513 kb on - strand at 3497.450 kb on + strand at 3497.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,494,734 + -0.2 3,495,189 + Shew_2949 0.47 +0.1 3,495,324 + Shew_2949 0.66 +0.4 3,495,358 + Shew_2949 0.70 -0.7 3,495,413 - Shew_2949 0.78 +0.1 3,495,725 - Shew_2950 0.16 +0.6 3,496,412 + Shew_2950 0.87 +0.9 3,496,479 + +0.0 3,496,513 - +0.7 3,497,450 + -0.1 3,497,487 - -0.4
Or see this region's nucleotide sequence