Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12700

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
2,840,008	+				-0.1
2,840,008	+				-0.5
2,840,009	-				-0.8
2,840,009	-				+0.6
2,840,014	+				-0.4
2,840,015	-				+0.2
2,840,015	-				+1.0
2,840,015	-				-0.7
2,840,015	-				-0.6
2,840,015	-				+2.4
2,840,015	-				-2.8
2,840,085	+		LRK54_RS12695	0.13	-1.1
2,840,085	+		LRK54_RS12695	0.13	-0.7
2,840,086	-		LRK54_RS12695	0.13	+1.6
2,840,089	+		LRK54_RS12695	0.13	-0.4
2,840,090	-		LRK54_RS12695	0.13	-0.9
2,840,097	+		LRK54_RS12695	0.14	+0.8
2,840,097	+		LRK54_RS12695	0.14	-2.4
2,840,100	+		LRK54_RS12695	0.14	-2.4
2,840,101	-		LRK54_RS12695	0.15	-1.7
2,840,104	-		LRK54_RS12695	0.15	+0.2
2,840,107	+		LRK54_RS12695	0.15	+0.6
2,840,108	-		LRK54_RS12695	0.15	-0.1
2,840,108	-		LRK54_RS12695	0.15	-1.2
2,840,108	-		LRK54_RS12695	0.15	+0.0
2,840,118	-		LRK54_RS12695	0.17	+0.0
2,840,139	+		LRK54_RS12695	0.19	-2.8
2,840,139	+		LRK54_RS12695	0.19	-1.6
2,840,140	-		LRK54_RS12695	0.19	+0.4
2,840,140	-		LRK54_RS12695	0.19	+3.2
2,840,140	-		LRK54_RS12695	0.19	-0.3
2,840,145	+		LRK54_RS12695	0.20	+0.2
2,840,152	-		LRK54_RS12695	0.20	-0.1
2,840,152	-		LRK54_RS12695	0.20	-0.3
2,840,152	-		LRK54_RS12695	0.20	-0.7
2,840,152	-		LRK54_RS12695	0.20	-1.0
2,840,152	-		LRK54_RS12695	0.20	+0.5
2,840,152	-		LRK54_RS12695	0.20	-2.8
2,840,152	-		LRK54_RS12695	0.20	+0.7
2,840,152	-		LRK54_RS12695	0.20	-0.7
2,840,155	+		LRK54_RS12695	0.21	-1.5
2,840,155	+		LRK54_RS12695	0.21	+0.4
2,840,155	+		LRK54_RS12695	0.21	+0.4
2,840,156	-		LRK54_RS12695	0.21	+1.2
2,840,156	-		LRK54_RS12695	0.21	-1.2
2,840,185	+		LRK54_RS12695	0.24	+1.0
2,840,185	+		LRK54_RS12695	0.24	+0.2
2,840,185	+		LRK54_RS12695	0.24	+2.2
2,840,185	+		LRK54_RS12695	0.24	-0.1
2,840,185	+		LRK54_RS12695	0.24	-1.2
2,840,185	+		LRK54_RS12695	0.24	-0.1
2,840,186	-		LRK54_RS12695	0.24	-0.3
2,840,186	-		LRK54_RS12695	0.24	-0.3
2,840,186	-		LRK54_RS12695	0.24	+0.6
2,840,186	-		LRK54_RS12695	0.24	+2.2
2,840,186	-		LRK54_RS12695	0.24	-1.8
2,840,244	-		LRK54_RS12695	0.31	-0.5
2,840,313	+		LRK54_RS12695	0.39	-1.0
2,840,314	-		LRK54_RS12695	0.39	+1.2
2,840,317	+		LRK54_RS12695	0.39	-1.3
2,840,317	+		LRK54_RS12695	0.39	-1.1
2,840,317	+		LRK54_RS12695	0.39	-0.6
2,840,317	+		LRK54_RS12695	0.39	+2.2
2,840,317	+		LRK54_RS12695	0.39	+1.1
2,840,317	+		LRK54_RS12695	0.39	+1.6
2,840,318	-		LRK54_RS12695	0.39	-1.4
2,840,318	-		LRK54_RS12695	0.39	+0.6
2,840,318	-		LRK54_RS12695	0.39	+0.0
2,840,321	+		LRK54_RS12695	0.40	-0.5
2,840,321	+		LRK54_RS12695	0.40	+1.6
2,840,321	+				+3.2
2,840,321	+		LRK54_RS12695	0.40	-1.0
2,840,321	+		LRK54_RS12695	0.40	+0.0
2,840,322	-		LRK54_RS12695	0.40	-1.9
2,840,343	+		LRK54_RS12695	0.42	-0.3
2,840,404	+		LRK54_RS12695	0.49	-0.6
2,840,407	+		LRK54_RS12695	0.50	+2.2
2,840,408	-		LRK54_RS12695	0.50	+0.4
2,840,419	+		LRK54_RS12695	0.51	-1.1
2,840,421	+		LRK54_RS12695	0.51	+1.8
2,840,422	-		LRK54_RS12695	0.51	-1.1
2,840,431	+		LRK54_RS12695	0.52	+0.1
2,840,431	+		LRK54_RS12695	0.52	+0.6
2,840,477	+		LRK54_RS12695	0.58	-2.8
2,840,477	+		LRK54_RS12695	0.58	+0.9
2,840,477	+		LRK54_RS12695	0.58	-1.1
2,840,480	+		LRK54_RS12695	0.58	-0.9
2,840,481	-		LRK54_RS12695	0.58	-3.1
2,840,509	+		LRK54_RS12695	0.61	-2.1
2,840,510	-		LRK54_RS12695	0.61	+1.2
2,840,518	+		LRK54_RS12695	0.62	-2.0
2,840,519	-		LRK54_RS12695	0.62	-1.2
2,840,519	-		LRK54_RS12695	0.62	-1.1
2,840,524	+		LRK54_RS12695	0.63	+0.0
2,840,524	+		LRK54_RS12695	0.63	+0.4
2,840,524	+		LRK54_RS12695	0.63	-0.9
2,840,524	+		LRK54_RS12695	0.63	-0.6
2,840,524	+		LRK54_RS12695	0.63	+3.2
2,840,525	-		LRK54_RS12695	0.63	+1.3
2,840,525	-		LRK54_RS12695	0.63	-1.8
2,840,525	-		LRK54_RS12695	0.63	-2.2
2,840,550	+		LRK54_RS12695	0.66	-1.6
2,840,550	+		LRK54_RS12695	0.66	-0.8
2,840,550	+		LRK54_RS12695	0.66	+0.4
2,840,551	-		LRK54_RS12695	0.66	+0.2
2,840,564	+		LRK54_RS12695	0.67	+2.2
2,840,619	+		LRK54_RS12695	0.74	+0.4
2,840,619	+		LRK54_RS12695	0.74	-2.5
2,840,620	-		LRK54_RS12695	0.74	-1.3
2,840,620	-		LRK54_RS12695	0.74	+1.6
2,840,620	-		LRK54_RS12695	0.74	+0.0
2,840,620	-		LRK54_RS12695	0.74	+0.9
2,840,626	+		LRK54_RS12695	0.75	-0.9
2,840,664	+		LRK54_RS12695	0.79	-0.2
2,840,683	+		LRK54_RS12695	0.81	+2.2
2,840,756	+		LRK54_RS12695	0.89	-0.9
2,840,756	+		LRK54_RS12695	0.89	-1.6
2,840,756	+		LRK54_RS12695	0.89	-1.7
2,840,757	-		LRK54_RS12695	0.89	-1.6
2,840,757	-		LRK54_RS12695	0.89	+0.0
2,840,757	-		LRK54_RS12695	0.89	-1.8
2,840,758	+		LRK54_RS12695	0.90	-0.3
2,840,759	-		LRK54_RS12695	0.90	+0.6
2,840,788	+				+0.6
2,840,833	+				+2.2
2,840,846	+				-0.7
2,840,847	-				-0.5
2,840,847	-				-0.3
2,840,869	+				-0.5
2,840,869	+				+3.2
2,840,870	-				+0.5
2,840,870	-				+1.6
2,840,870	-				-0.3
2,840,870	-				-0.2
2,840,873	+				+0.6
2,840,873	+				-2.2
2,840,873	+				-0.7
2,840,874	-				+0.9
2,840,923	-				+2.2
2,841,040	+		LRK54_RS12700	0.15	-2.2
2,841,111	-		LRK54_RS12700	0.36	-2.4
2,841,111	-		LRK54_RS12700	0.36	+0.6
2,841,134	+		LRK54_RS12700	0.43	+0.2
2,841,134	+		LRK54_RS12700	0.43	+0.0
2,841,134	+		LRK54_RS12700	0.43	+2.0
2,841,134	+		LRK54_RS12700	0.43	+0.7
2,841,134	+		LRK54_RS12700	0.43	-2.4
2,841,134	+		LRK54_RS12700	0.43	+0.2
2,841,135	-		LRK54_RS12700	0.43	-0.7
2,841,135	-		LRK54_RS12700	0.43	-2.4
2,841,135	-		LRK54_RS12700	0.43	+0.1
2,841,135	-		LRK54_RS12700	0.43	+0.2
2,841,135	-		LRK54_RS12700	0.43	-1.3
2,841,154	-		LRK54_RS12700	0.49	-2.8
2,841,184	+		LRK54_RS12700	0.58	+2.2
2,841,184	+		LRK54_RS12700	0.58	-2.3
2,841,184	+		LRK54_RS12700	0.58	-1.4
2,841,184	+		LRK54_RS12700	0.58	-1.2
2,841,185	-		LRK54_RS12700	0.58	-0.8
2,841,185	-		LRK54_RS12700	0.58	-2.1
2,841,229	+		LRK54_RS12700	0.72	-1.0
2,841,230	-		LRK54_RS12700	0.72	-0.1
2,841,344	-				-1.1
2,841,344	-				-2.4
2,841,344	-				+3.2
2,841,421	+				-2.1
2,841,421	+				-2.0
2,841,603	+				-0.5
2,841,603	+				-2.4
2,841,603	+				+0.0
2,841,604	-				+2.6
2,841,604	-				-0.7
2,841,604	-				-2.0
2,841,771	+		LRK54_RS12705	0.13	+0.1
2,841,772	-		LRK54_RS12705	0.13	-1.0
2,841,774	+		LRK54_RS12705	0.13	-2.7
2,841,774	+		LRK54_RS12705	0.13	+0.4
2,841,774	+		LRK54_RS12705	0.13	+1.2
2,841,774	+		LRK54_RS12705	0.13	-1.9
2,841,774	+		LRK54_RS12705	0.13	-2.8
2,841,774	+		LRK54_RS12705	0.13	+1.2
2,841,774	+		LRK54_RS12705	0.13	-0.5
2,841,774	+		LRK54_RS12705	0.13	+1.2
2,841,774	+		LRK54_RS12705	0.13	-1.6
2,841,774	+		LRK54_RS12705	0.13	+1.2
2,841,774	+		LRK54_RS12705	0.13	-0.6
2,841,774	+		LRK54_RS12705	0.13	-1.8
2,841,775	-		LRK54_RS12705	0.13	+3.8
2,841,775	-		LRK54_RS12705	0.13	-1.6
2,841,775	-		LRK54_RS12705	0.13	+0.9
2,841,775	-		LRK54_RS12705	0.13	-2.2
2,841,775	-		LRK54_RS12705	0.13	-0.1
2,841,775	-		LRK54_RS12705	0.13	-0.1
2,841,775	-		LRK54_RS12705	0.13	-0.6
2,841,775	-		LRK54_RS12705	0.13	-0.4
2,841,775	-		LRK54_RS12705	0.13	+0.2
2,841,775	-		LRK54_RS12705	0.13	-1.3
2,841,799	+		LRK54_RS12705	0.14	-0.5
2,841,799	+		LRK54_RS12705	0.14	+0.0
2,841,799	+		LRK54_RS12705	0.14	+1.6
2,841,799	+		LRK54_RS12705	0.14	+3.2
2,841,800	-		LRK54_RS12705	0.14	+2.2
2,841,800	-		LRK54_RS12705	0.14	-2.1
2,841,805	+		LRK54_RS12705	0.14	+0.4
2,841,805	+		LRK54_RS12705	0.14	-2.0
2,841,805	+		LRK54_RS12705	0.14	-1.6
2,841,805	+		LRK54_RS12705	0.14	-0.8
2,841,806	-		LRK54_RS12705	0.14	-0.1
2,841,806	-		LRK54_RS12705	0.14	+0.9
2,841,806	-		LRK54_RS12705	0.14	+0.0
2,841,806	-		LRK54_RS12705	0.14	+2.2
2,841,817	+		LRK54_RS12705	0.14	-0.9
2,841,817	+		LRK54_RS12705	0.14	-0.8
2,841,817	+		LRK54_RS12705	0.14	+0.9
2,841,817	+		LRK54_RS12705	0.14	+0.1
2,841,817	+		LRK54_RS12705	0.14	-1.1
2,841,817	+		LRK54_RS12705	0.14	-0.4
2,841,818	-		LRK54_RS12705	0.14	-0.1
2,841,818	-		LRK54_RS12705	0.14	+0.4
2,841,818	-		LRK54_RS12705	0.14	-1.3
2,841,818	-		LRK54_RS12705	0.14	-1.6
2,841,818	-		LRK54_RS12705	0.14	-1.6
2,841,818	-		LRK54_RS12705	0.14	+1.6
2,841,818	-		LRK54_RS12705	0.14	+0.5
2,841,921	+		LRK54_RS12705	0.18	-1.6
2,841,921	+		LRK54_RS12705	0.18	+0.2
2,841,921	+		LRK54_RS12705	0.18	-0.3
2,841,921	+		LRK54_RS12705	0.18	+2.2
2,841,921	+		LRK54_RS12705	0.18	-1.7
2,841,922	-		LRK54_RS12705	0.18	-1.6
2,841,922	-		LRK54_RS12705	0.18	+2.2
2,841,930	+		LRK54_RS12705	0.19	-1.4
2,841,930	+		LRK54_RS12705	0.19	-1.5
2,841,930	+		LRK54_RS12705	0.19	-1.6
2,841,931	-		LRK54_RS12705	0.19	+2.2
2,841,969	+		LRK54_RS12705	0.20	-1.0
2,841,969	+		LRK54_RS12705	0.20	-1.2
2,842,050	+		LRK54_RS12705	0.23	-1.7
2,842,050	+		LRK54_RS12705	0.23	-1.7
2,842,050	+		LRK54_RS12705	0.23	-0.2
2,842,050	+		LRK54_RS12705	0.23	+1.2
2,842,050	+		LRK54_RS12705	0.23	+2.2
2,842,050	+		LRK54_RS12705	0.23	-0.1
2,842,050	+		LRK54_RS12705	0.23	-1.7
2,842,051	-		LRK54_RS12705	0.23	-2.7
2,842,051	-		LRK54_RS12705	0.23	-1.5
2,842,051	-		LRK54_RS12705	0.23	+0.0
2,842,051	-		LRK54_RS12705	0.23	-0.5
2,842,051	-		LRK54_RS12705	0.23	-1.3
2,842,051	-		LRK54_RS12705	0.23	+1.2
2,842,224	+		LRK54_RS12705	0.30	-1.6
2,842,225	-		LRK54_RS12705	0.30	-1.6
2,842,225	-		LRK54_RS12705	0.30	-1.7
2,842,225	-		LRK54_RS12705	0.30	-2.1
2,842,225	-		LRK54_RS12705	0.30	+0.9
2,842,236	+		LRK54_RS12705	0.30	+1.6
2,842,236	+		LRK54_RS12705	0.30	-2.0
2,842,236	+		LRK54_RS12705	0.30	-1.8
2,842,236	+		LRK54_RS12705	0.30	-1.0
2,842,236	+		LRK54_RS12705	0.30	+1.3
2,842,236	+		LRK54_RS12705	0.30	+0.4
2,842,236	+		LRK54_RS12705	0.30	+0.1
2,842,236	+		LRK54_RS12705	0.30	-1.5
2,842,236	+		LRK54_RS12705	0.30	+1.0
2,842,236	+		LRK54_RS12705	0.30	-1.7
2,842,236	+		LRK54_RS12705	0.30	-0.4
2,842,236	+		LRK54_RS12705	0.30	-0.5
2,842,236	+		LRK54_RS12705	0.30	-0.9
2,842,237	-		LRK54_RS12705	0.30	+2.2
2,842,237	-		LRK54_RS12705	0.30	-1.5
2,842,237	-		LRK54_RS12705	0.30	-0.8
2,842,237	-		LRK54_RS12705	0.30	+1.6
2,842,237	-		LRK54_RS12705	0.30	-0.1
2,842,237	-		LRK54_RS12705	0.30	-0.8
2,842,237	-		LRK54_RS12705	0.30	-2.6
2,842,237	-		LRK54_RS12705	0.30	-0.3
2,842,237	-		LRK54_RS12705	0.30	+1.5
2,842,275	+		LRK54_RS12705	0.32	-0.8
2,842,275	+		LRK54_RS12705	0.32	-0.3
2,842,275	+		LRK54_RS12705	0.32	+0.4
2,842,275	+		LRK54_RS12705	0.32	+1.6
2,842,276	-		LRK54_RS12705	0.32	-0.5
2,842,276	-		LRK54_RS12705	0.32	-0.8