Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2374

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
2,752,099	+		Psyr_2373	0.20	+1.5
2,752,099	+		Psyr_2373	0.20	-0.5
2,752,100	-		Psyr_2373	0.20	+0.3
2,752,100	-		Psyr_2373	0.20	-0.2
2,752,100	-		Psyr_2373	0.20	-0.2
2,752,100	-		Psyr_2373	0.20	-0.5
2,752,100	-		Psyr_2373	0.20	-1.5
2,752,100	-		Psyr_2373	0.20	+0.3
2,752,222	+		Psyr_2373	0.33	-0.9
2,752,223	-		Psyr_2373	0.33	-0.9
2,752,223	-		Psyr_2373	0.33	-0.5
2,752,357	-		Psyr_2373	0.46	+0.4
2,752,429	-		Psyr_2373	0.53	-0.5
2,752,429	-		Psyr_2373	0.53	+0.1
2,752,429	-		Psyr_2373	0.53	+0.5
2,752,471	+		Psyr_2373	0.58	-1.6
2,752,471	+		Psyr_2373	0.58	+1.0
2,752,494	+		Psyr_2373	0.60	-1.0
2,752,494	+		Psyr_2373	0.60	-1.6
2,752,494	+		Psyr_2373	0.60	-0.8
2,752,494	+		Psyr_2373	0.60	-0.6
2,752,494	+		Psyr_2373	0.60	+2.0
2,752,494	+		Psyr_2373	0.60	+2.0
2,752,495	-		Psyr_2373	0.60	+0.1
2,752,495	-				+0.3
2,752,495	-		Psyr_2373	0.60	-0.4
2,752,495	-		Psyr_2373	0.60	-0.0
2,752,503	+		Psyr_2373	0.61	-0.7
2,752,504	-		Psyr_2373	0.61	+1.2
2,752,504	-		Psyr_2373	0.61	-0.3
2,752,504	-		Psyr_2373	0.61	+0.0
2,752,627	+		Psyr_2373	0.73	+0.1
2,752,706	-		Psyr_2373	0.81	-0.6
2,752,706	-		Psyr_2373	0.81	-1.1
2,752,821	+				-0.4
2,752,827	+				+1.7
2,752,827	+				+0.1
2,752,827	+				-1.9
2,752,827	+				-0.3
2,752,828	-				-0.1
2,752,905	-				-0.9
2,752,919	+				-0.5
2,752,919	+				-2.0
2,752,919	+				+0.2
2,752,919	+				+0.9
2,752,919	+				-0.0
2,752,919	+				+0.3
2,752,920	-				+0.3
2,752,920	-				-1.7
2,752,920	-				-1.0
2,752,920	-				-0.7
2,752,920	-				+1.4
2,752,920	-				+1.3
2,752,920	-				-0.8
2,752,923	+				+0.7
2,752,924	-				-0.4
2,752,924	-				-0.1
2,752,924	-				+1.0
2,752,924	-				-0.6
2,752,924	-				+1.3
2,753,040	+				+1.0
2,753,041	-				+0.7
2,753,041	-				+0.2
2,753,041	-				-0.1
2,753,041	-				+0.0
2,753,111	+		Psyr_2374	0.12	+0.8
2,753,204	+		Psyr_2374	0.20	-0.2
2,753,204	+		Psyr_2374	0.20	-0.7
2,753,204	+		Psyr_2374	0.20	-0.2
2,753,205	-		Psyr_2374	0.20	-0.5
2,753,212	-		Psyr_2374	0.20	-0.8
2,753,212	-		Psyr_2374	0.20	+1.1
2,753,212	-		Psyr_2374	0.20	-2.1
2,753,251	+		Psyr_2374	0.23	-0.5
2,753,251	+		Psyr_2374	0.23	-0.1
2,753,252	-		Psyr_2374	0.23	-0.3
2,753,252	-		Psyr_2374	0.23	-0.6
2,753,252	-		Psyr_2374	0.23	+1.5
2,753,417	+		Psyr_2374	0.36	-0.2
2,753,417	+		Psyr_2374	0.36	+0.3
2,753,418	-		Psyr_2374	0.36	-0.9
2,753,666	+		Psyr_2374	0.55	+2.3
2,753,666	+		Psyr_2374	0.55	-0.1
2,753,756	+		Psyr_2374	0.62	-0.4
2,753,757	-		Psyr_2374	0.62	-0.2
2,753,757	-		Psyr_2374	0.62	-0.9
2,753,909	+		Psyr_2374	0.74	+0.5
2,753,960	+		Psyr_2374	0.78	-1.4
2,753,960	+		Psyr_2374	0.78	-0.5
2,753,960	+		Psyr_2374	0.78	+1.2
2,753,961	-		Psyr_2374	0.78	+0.9
2,753,961	-		Psyr_2374	0.78	-0.6
2,753,963	+		Psyr_2374	0.78	+0.2
2,754,199	+				-0.7
2,754,199	+				+0.3
2,754,491	+		Psyr_2375	0.35	-0.3
2,754,491	+		Psyr_2375	0.35	+0.0
2,754,491	+		Psyr_2375	0.35	+2.3
2,754,551	+		Psyr_2375	0.43	+0.5
2,754,552	-		Psyr_2375	0.43	+0.6
2,754,642	+		Psyr_2375	0.56	-1.0
2,754,642	+		Psyr_2375	0.56	-0.4
2,754,642	+		Psyr_2375	0.56	-1.0
2,754,642	+		Psyr_2375	0.56	-0.6
2,754,642	+		Psyr_2375	0.56	-0.9
2,754,643	-		Psyr_2375	0.56	+0.7
2,754,643	-		Psyr_2375	0.56	+2.4
2,754,643	-		Psyr_2375	0.56	+0.1
2,754,862	+				-1.3
2,754,987	-				+0.1
2,754,994	+				+0.1
2,754,995	-				+2.5
2,755,100	-		Psyr_2376	0.12	-0.9
2,755,101	+		Psyr_2376	0.12	-0.1
2,755,101	+		Psyr_2376	0.12	+0.9
2,755,133	-		Psyr_2376	0.17	+0.7
2,755,164	+		Psyr_2376	0.21	-0.5
2,755,164	+		Psyr_2376	0.21	-0.2
2,755,165	-		Psyr_2376	0.21	+1.9
2,755,191	+		Psyr_2376	0.24	-0.1
2,755,236	+		Psyr_2376	0.30	+0.5
2,755,236	+		Psyr_2376	0.30	-0.0
2,755,236	+		Psyr_2376	0.30	+0.2
2,755,236	+		Psyr_2376	0.30	-0.3
2,755,236	+		Psyr_2376	0.30	-1.7
2,755,237	-		Psyr_2376	0.30	-0.5
2,755,239	+		Psyr_2376	0.30	+0.5
2,755,239	+		Psyr_2376	0.30	-0.5
2,755,249	+		Psyr_2376	0.31	-0.4