Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5003

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5001 and Psyr_5002 overlap by 8 nucleotidesPsyr_5002 and Psyr_5003 are separated by 244 nucleotidesPsyr_5003 and Psyr_5004 are separated by 121 nucleotides Psyr_5001: Psyr_5001 - conserved hypothetical protein, at 5,930,376 to 5,932,823 _5001 Psyr_5002: Psyr_5002 - conserved hypothetical protein, at 5,932,816 to 5,933,298 _5002 Psyr_5003: Psyr_5003 - MscS Mechanosensitive ion channel, at 5,933,543 to 5,934,343 _5003 Psyr_5004: Psyr_5004 - chemotaxis sensory transducer, at 5,934,465 to 5,936,483 _5004 Position (kb) 5933 5934 5935Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5932.801 kb on + strandat 5932.801 kb on + strandat 5932.801 kb on + strandat 5932.801 kb on + strandat 5932.801 kb on + strandat 5932.801 kb on + strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5932.802 kb on - strandat 5933.060 kb on + strand, within Psyr_5002at 5933.060 kb on + strand, within Psyr_5002at 5933.060 kb on + strand, within Psyr_5002at 5933.060 kb on + strand, within Psyr_5002at 5933.061 kb on - strand, within Psyr_5002at 5933.061 kb on - strand, within Psyr_5002at 5933.061 kb on - strand, within Psyr_5002at 5933.061 kb on - strand, within Psyr_5002at 5933.061 kb on - strand, within Psyr_5002at 5933.069 kb on + strand, within Psyr_5002at 5933.069 kb on + strand, within Psyr_5002at 5933.069 kb on + strand, within Psyr_5002at 5933.069 kb on + strand, within Psyr_5002at 5933.069 kb on + strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.070 kb on - strand, within Psyr_5002at 5933.174 kb on + strand, within Psyr_5002at 5933.174 kb on + strand, within Psyr_5002at 5933.249 kb on + strand, within Psyr_5002at 5933.249 kb on + strand, within Psyr_5002at 5933.250 kb on - strandat 5933.250 kb on - strandat 5933.298 kb on + strandat 5933.356 kb on + strandat 5933.356 kb on + strandat 5933.356 kb on + strandat 5933.356 kb on + strandat 5933.357 kb on - strandat 5933.424 kb on - strandat 5933.451 kb on - strandat 5933.451 kb on - strandat 5933.451 kb on - strandat 5933.451 kb on - strandat 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.485 kb on + strandat 5933.486 kb on - strandat 5933.523 kb on - strandat 5933.523 kb on - strandat 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.748 kb on - strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.779 kb on + strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.780 kb on - strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.807 kb on + strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.808 kb on - strand, within Psyr_5003at 5933.948 kb on - strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.189 kb on + strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.190 kb on - strand, within Psyr_5003at 5934.264 kb on - strandat 5934.281 kb on + strandat 5934.281 kb on + strandat 5934.282 kb on - strandat 5934.282 kb on - strandat 5934.354 kb on + strandat 5934.408 kb on + strandat 5934.409 kb on - strandat 5934.409 kb on - strandat 5934.452 kb on + strandat 5934.460 kb on + strandat 5934.460 kb on + strandat 5934.461 kb on - strandat 5934.475 kb on + strandat 5934.475 kb on + strandat 5934.475 kb on + strandat 5934.476 kb on - strandat 5934.476 kb on - strandat 5934.476 kb on - strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.527 kb on + strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.528 kb on - strandat 5934.582 kb on + strandat 5934.582 kb on + strandat 5934.583 kb on - strandat 5934.714 kb on + strand, within Psyr_5004at 5934.715 kb on - strand, within Psyr_5004at 5934.715 kb on - strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.793 kb on + strand, within Psyr_5004at 5934.794 kb on - strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.930 kb on + strand, within Psyr_5004at 5934.931 kb on - strand, within Psyr_5004at 5934.985 kb on - strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.209 kb on + strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.210 kb on - strand, within Psyr_5004at 5935.318 kb on - strand, within Psyr_5004at 5935.318 kb on - strand, within Psyr_5004

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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5,932,801 + -0.4
5,932,801 + -0.6
5,932,801 + -0.0
5,932,801 + -0.1
5,932,801 + -0.6
5,932,801 + -0.4
5,932,802 - -0.8
5,932,802 - +1.0
5,932,802 - -0.6
5,932,802 - +0.2
5,932,802 - -1.2
5,932,802 - +0.3
5,932,802 - -2.1
5,933,060 + Psyr_5002 0.51 +1.4
5,933,060 + Psyr_5002 0.51 +2.0
5,933,060 + Psyr_5002 0.51 +0.1
5,933,060 + Psyr_5002 0.51 -0.6
5,933,061 - Psyr_5002 0.51 -0.6
5,933,061 - Psyr_5002 0.51 +0.0
5,933,061 - Psyr_5002 0.51 -0.7
5,933,061 - Psyr_5002 0.51 +0.3
5,933,061 - Psyr_5002 0.51 -0.3
5,933,069 + Psyr_5002 0.52 +0.6
5,933,069 + Psyr_5002 0.52 +0.6
5,933,069 + Psyr_5002 0.52 +0.0
5,933,069 + Psyr_5002 0.52 +0.2
5,933,069 + Psyr_5002 0.52 -0.3
5,933,070 - Psyr_5002 0.53 +1.9
5,933,070 - Psyr_5002 0.53 +0.7
5,933,070 - Psyr_5002 0.53 -0.7
5,933,070 - Psyr_5002 0.53 +0.3
5,933,070 - Psyr_5002 0.53 +0.9
5,933,070 - Psyr_5002 0.53 +1.8
5,933,174 + Psyr_5002 0.74 +0.0
5,933,174 + Psyr_5002 0.74 -0.0
5,933,249 + Psyr_5002 0.90 -0.1
5,933,249 + Psyr_5002 0.90 +0.1
5,933,250 - +0.5
5,933,250 - +1.0
5,933,298 + +0.5
5,933,356 + +1.1
5,933,356 + +0.5
5,933,356 + -0.1
5,933,356 + +0.2
5,933,357 - +0.4
5,933,424 - +0.6
5,933,451 - +1.2
5,933,451 - +0.3
5,933,451 - -0.4
5,933,451 - -2.1
5,933,485 + -0.5
5,933,485 + +2.0
5,933,485 + +0.2
5,933,485 + +0.0
5,933,486 - +0.1
5,933,523 - +1.1
5,933,523 - +0.5
5,933,748 - Psyr_5003 0.26 +1.3
5,933,748 - Psyr_5003 0.26 -0.6
5,933,748 - Psyr_5003 0.26 +0.3
5,933,748 - Psyr_5003 0.26 -0.4
5,933,748 - Psyr_5003 0.26 -0.3
5,933,779 + Psyr_5003 0.29 +1.0
5,933,779 + Psyr_5003 0.29 +0.9
5,933,779 + Psyr_5003 0.29 +0.7
5,933,779 + Psyr_5003 0.29 +0.5
5,933,779 + Psyr_5003 0.29 -0.1
5,933,779 + Psyr_5003 0.29 -0.3
5,933,779 + Psyr_5003 0.29 +1.1
5,933,779 + Psyr_5003 0.29 +0.9
5,933,780 - Psyr_5003 0.30 -0.5
5,933,780 - Psyr_5003 0.30 -0.5
5,933,780 - Psyr_5003 0.30 -1.0
5,933,780 - Psyr_5003 0.30 +1.9
5,933,780 - Psyr_5003 0.30 -1.2
5,933,807 + Psyr_5003 0.33 -0.5
5,933,807 + Psyr_5003 0.33 +0.5
5,933,807 + Psyr_5003 0.33 +0.0
5,933,807 + Psyr_5003 0.33 +0.5
5,933,808 - Psyr_5003 0.33 -0.2
5,933,808 - Psyr_5003 0.33 -0.4
5,933,808 - Psyr_5003 0.33 +0.3
5,933,808 - Psyr_5003 0.33 +0.6
5,933,948 - Psyr_5003 0.51 +0.4
5,934,189 + Psyr_5003 0.81 +1.4
5,934,189 + Psyr_5003 0.81 +0.6
5,934,189 + Psyr_5003 0.81 +0.0
5,934,189 + Psyr_5003 0.81 +0.9
5,934,189 + Psyr_5003 0.81 -0.3
5,934,189 + Psyr_5003 0.81 +1.3
5,934,190 - Psyr_5003 0.81 +0.6
5,934,190 - Psyr_5003 0.81 +0.5
5,934,190 - Psyr_5003 0.81 +1.8
5,934,190 - Psyr_5003 0.81 +0.4
5,934,190 - Psyr_5003 0.81 -0.1
5,934,190 - Psyr_5003 0.81 +1.2
5,934,190 - Psyr_5003 0.81 +1.1
5,934,264 - +0.7
5,934,281 + +0.0
5,934,281 + +0.0
5,934,282 - +0.6
5,934,282 - +0.4
5,934,354 + +0.1
5,934,408 + +3.0
5,934,409 - +0.9
5,934,409 - -0.4
5,934,452 + -0.3
5,934,460 + +0.7
5,934,460 + +0.4
5,934,461 - +0.9
5,934,475 + +0.9
5,934,475 + -0.3
5,934,475 + +1.2
5,934,476 - -0.7
5,934,476 - -1.3
5,934,476 - -0.1
5,934,527 + +1.4
5,934,527 + -0.4
5,934,527 + +0.4
5,934,527 + +0.5
5,934,527 + +1.6
5,934,528 - -0.6
5,934,528 - +1.0
5,934,528 - -0.9
5,934,528 - -0.7
5,934,528 - +0.1
5,934,528 - +0.9
5,934,582 + +1.0
5,934,582 + +0.4
5,934,583 - +1.7
5,934,714 + Psyr_5004 0.12 +1.4
5,934,715 - Psyr_5004 0.12 +1.6
5,934,715 - Psyr_5004 0.12 +0.6
5,934,793 + Psyr_5004 0.16 -1.2
5,934,793 + Psyr_5004 0.16 +0.8
5,934,793 + Psyr_5004 0.16 -0.1
5,934,793 + Psyr_5004 0.16 +0.3
5,934,794 - Psyr_5004 0.16 -0.5
5,934,930 + Psyr_5004 0.23 +0.3
5,934,930 + Psyr_5004 0.23 +3.3
5,934,930 + Psyr_5004 0.23 -1.0
5,934,931 - Psyr_5004 0.23 +0.6
5,934,985 - Psyr_5004 0.26 +0.2
5,935,209 + Psyr_5004 0.37 +0.6
5,935,209 + Psyr_5004 0.37 -0.4
5,935,209 + Psyr_5004 0.37 -0.3
5,935,209 + Psyr_5004 0.37 -0.7
5,935,209 + Psyr_5004 0.37 +1.3
5,935,209 + Psyr_5004 0.37 -0.1
5,935,209 + Psyr_5004 0.37 -0.1
5,935,209 + Psyr_5004 0.37 +0.0
5,935,210 - Psyr_5004 0.37 +0.1
5,935,210 - Psyr_5004 0.37 -0.1
5,935,210 - Psyr_5004 0.37 +0.2
5,935,210 - Psyr_5004 0.37 +1.0
5,935,210 - Psyr_5004 0.37 +0.4
5,935,210 - Psyr_5004 0.37 -1.4
5,935,210 - Psyr_5004 0.37 +0.6
5,935,318 - Psyr_5004 0.42 +0.5
5,935,318 - Psyr_5004 0.42 -0.1

Or see this region's nucleotide sequence