Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1431 and Psyr_1432 are separated by 291 nucleotides Psyr_1432 and Psyr_1433 are separated by 273 nucleotides
Psyr_1431: Psyr_1431 - hypothetical protein, at 1,620,353 to 1,620,643
_1431
Psyr_1432: Psyr_1432 - hypothetical protein, at 1,620,935 to 1,621,261
_1432
Psyr_1433: Psyr_1433 - C-5 cytosine-specific DNA methylase, at 1,621,535 to 1,622,950
_1433
Position (kb) 1620
1621
1622 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1619.954 kb on + strand at 1619.954 kb on + strand at 1619.954 kb on + strand at 1619.954 kb on + strand at 1619.954 kb on + strand at 1619.954 kb on + strand at 1619.955 kb on - strand at 1619.955 kb on - strand at 1619.955 kb on - strand at 1619.955 kb on - strand at 1619.956 kb on + strand at 1619.986 kb on - strand at 1620.048 kb on + strand at 1620.065 kb on + strand at 1620.065 kb on + strand at 1620.066 kb on - strand at 1620.066 kb on - strand at 1620.066 kb on - strand at 1620.092 kb on + strand at 1620.101 kb on - strand at 1620.136 kb on + strand at 1620.136 kb on + strand at 1620.137 kb on - strand at 1620.137 kb on - strand at 1620.137 kb on - strand at 1620.137 kb on - strand at 1620.177 kb on + strand at 1620.178 kb on - strand at 1620.178 kb on - strand at 1620.178 kb on - strand at 1620.191 kb on + strand at 1620.191 kb on + strand at 1620.191 kb on + strand at 1620.277 kb on + strand at 1620.277 kb on + strand at 1620.277 kb on + strand at 1620.277 kb on + strand at 1620.277 kb on + strand at 1620.277 kb on + strand at 1620.278 kb on - strand at 1620.278 kb on - strand at 1620.278 kb on - strand at 1620.278 kb on - strand at 1620.283 kb on - strand at 1620.296 kb on + strand at 1620.299 kb on + strand at 1620.299 kb on + strand at 1620.300 kb on - strand at 1620.300 kb on - strand at 1620.305 kb on - strand at 1620.314 kb on + strand at 1620.315 kb on - strand at 1620.329 kb on + strand at 1620.329 kb on + strand at 1620.330 kb on - strand at 1620.330 kb on - strand at 1620.381 kb on + strand at 1620.381 kb on + strand at 1620.381 kb on + strand at 1620.392 kb on - strand, within Psyr_1431 at 1620.412 kb on + strand, within Psyr_1431 at 1620.447 kb on + strand, within Psyr_1431 at 1620.447 kb on + strand, within Psyr_1431 at 1620.448 kb on - strand, within Psyr_1431 at 1620.448 kb on - strand, within Psyr_1431 at 1620.448 kb on - strand, within Psyr_1431 at 1620.498 kb on + strand, within Psyr_1431 at 1620.556 kb on + strand, within Psyr_1431 at 1620.556 kb on + strand, within Psyr_1431 at 1620.557 kb on - strand, within Psyr_1431 at 1620.557 kb on - strand, within Psyr_1431 at 1620.557 kb on - strand, within Psyr_1431 at 1620.559 kb on + strand, within Psyr_1431 at 1620.559 kb on + strand, within Psyr_1431 at 1620.560 kb on - strand, within Psyr_1431 at 1620.673 kb on + strand at 1620.673 kb on + strand at 1620.673 kb on + strand at 1620.673 kb on + strand at 1620.674 kb on - strand at 1620.674 kb on - strand at 1620.674 kb on - strand at 1620.674 kb on - strand at 1620.674 kb on - strand at 1620.727 kb on - strand at 1620.799 kb on + strand at 1620.799 kb on + strand at 1620.800 kb on - strand at 1620.800 kb on - strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.954 kb on + strand at 1620.955 kb on - strand at 1620.955 kb on - strand at 1620.958 kb on + strand at 1620.958 kb on + strand at 1620.958 kb on + strand at 1620.959 kb on - strand at 1620.959 kb on - strand at 1620.959 kb on - strand at 1620.959 kb on - strand at 1620.972 kb on + strand, within Psyr_1432 at 1621.048 kb on + strand, within Psyr_1432 at 1621.113 kb on - strand, within Psyr_1432 at 1621.113 kb on - strand, within Psyr_1432 at 1621.161 kb on + strand, within Psyr_1432 at 1621.162 kb on - strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.214 kb on + strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.215 kb on - strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.216 kb on + strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.217 kb on - strand, within Psyr_1432 at 1621.260 kb on - strand at 1621.289 kb on + strand at 1621.289 kb on + strand at 1621.290 kb on - strand at 1621.293 kb on + strand at 1621.293 kb on + strand at 1621.293 kb on + strand at 1621.294 kb on - strand at 1621.294 kb on - strand at 1621.349 kb on + strand at 1621.404 kb on + strand at 1621.404 kb on + strand at 1621.405 kb on - strand at 1621.405 kb on - strand at 1621.446 kb on + strand at 1621.446 kb on + strand at 1621.446 kb on + strand at 1621.447 kb on - strand at 1621.472 kb on - strand at 1621.480 kb on + strand at 1621.481 kb on - strand at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.484 kb on - strand at 1621.484 kb on - strand at 1621.484 kb on - strand at 1621.484 kb on - strand at 1621.484 kb on - strand at 1621.596 kb on - strand at 1621.626 kb on + strand at 1621.626 kb on + strand at 1621.626 kb on + strand at 1621.626 kb on + strand at 1621.626 kb on + strand at 1621.627 kb on - strand at 1621.627 kb on - strand at 1621.627 kb on - strand at 1621.671 kb on - strand at 1621.766 kb on - strand, within Psyr_1433 at 1621.766 kb on - strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.807 kb on + strand, within Psyr_1433 at 1621.808 kb on - strand, within Psyr_1433 at 1621.808 kb on - strand, within Psyr_1433 at 1621.838 kb on + strand, within Psyr_1433 at 1621.839 kb on - strand, within Psyr_1433 at 1621.839 kb on - strand, within Psyr_1433 at 1621.839 kb on - strand, within Psyr_1433 at 1621.839 kb on - strand, within Psyr_1433 at 1621.865 kb on - strand, within Psyr_1433 at 1621.885 kb on + strand, within Psyr_1433 at 1621.886 kb on - strand, within Psyr_1433 at 1621.886 kb on - strand, within Psyr_1433 at 1621.896 kb on + strand, within Psyr_1433 at 1621.897 kb on - strand, within Psyr_1433 at 1621.902 kb on + strand, within Psyr_1433 at 1621.903 kb on - strand, within Psyr_1433 at 1621.903 kb on - strand, within Psyr_1433 at 1621.903 kb on - strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.022 kb on + strand, within Psyr_1433 at 1622.023 kb on - strand, within Psyr_1433 at 1622.023 kb on - strand, within Psyr_1433 at 1622.023 kb on - strand, within Psyr_1433 at 1622.162 kb on + strand, within Psyr_1433 at 1622.163 kb on - strand, within Psyr_1433 at 1622.219 kb on + strand, within Psyr_1433
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 1,619,954 + +0.2 1,619,954 + -0.7 1,619,954 + -1.0 1,619,954 + -0.2 1,619,954 + +0.2 1,619,954 + -2.1 1,619,955 - +0.4 1,619,955 - +0.1 1,619,955 - -0.2 1,619,955 - -0.9 1,619,956 + +1.3 1,619,986 - -1.1 1,620,048 + +0.3 1,620,065 + +1.2 1,620,065 + +0.7 1,620,066 - +0.3 1,620,066 - -0.1 1,620,066 - -0.7 1,620,092 + +0.3 1,620,101 - -0.5 1,620,136 + +2.0 1,620,136 + -0.9 1,620,137 - -1.1 1,620,137 - -0.6 1,620,137 - -1.2 1,620,137 - -0.9 1,620,177 + +0.3 1,620,178 - -0.3 1,620,178 - +1.6 1,620,178 - -0.7 1,620,191 + -1.4 1,620,191 + +0.8 1,620,191 + -0.1 1,620,277 + -0.3 1,620,277 + +0.7 1,620,277 + +0.2 1,620,277 + +0.8 1,620,277 + -0.8 1,620,277 + -0.3 1,620,278 - +1.9 1,620,278 - -0.5 1,620,278 - -0.2 1,620,278 - -1.8 1,620,283 - -1.2 1,620,296 + -2.0 1,620,299 + -0.2 1,620,299 + +0.1 1,620,300 - +0.7 1,620,300 - +0.3 1,620,305 - -0.9 1,620,314 + +0.0 1,620,315 - -0.4 1,620,329 + +0.8 1,620,329 + -0.3 1,620,330 - -0.2 1,620,330 - -0.5 1,620,381 + -1.8 1,620,381 + -0.5 1,620,381 + +0.1 1,620,392 - Psyr_1431 0.13 +0.5 1,620,412 + Psyr_1431 0.20 +0.5 1,620,447 + Psyr_1431 0.32 +0.2 1,620,447 + Psyr_1431 0.32 -2.3 1,620,448 - Psyr_1431 0.33 +0.8 1,620,448 - Psyr_1431 0.33 -0.2 1,620,448 - Psyr_1431 0.33 -1.1 1,620,498 + Psyr_1431 0.50 -0.8 1,620,556 + Psyr_1431 0.70 +1.3 1,620,556 + Psyr_1431 0.70 -0.5 1,620,557 - Psyr_1431 0.70 +1.4 1,620,557 - Psyr_1431 0.70 +0.2 1,620,557 - Psyr_1431 0.70 -1.3 1,620,559 + Psyr_1431 0.71 -0.4 1,620,559 + Psyr_1431 0.71 -2.0 1,620,560 - Psyr_1431 0.71 -0.8 1,620,673 + -0.7 1,620,673 + -0.3 1,620,673 + -1.6 1,620,673 + -0.3 1,620,674 - -0.5 1,620,674 - -0.7 1,620,674 - -1.1 1,620,674 - -0.3 1,620,674 - +0.8 1,620,727 - -0.3 1,620,799 + +1.2 1,620,799 + -0.6 1,620,800 - +0.2 1,620,800 - -0.5 1,620,954 + -0.5 1,620,954 + -0.5 1,620,954 + -0.0 1,620,954 + +0.3 1,620,954 + -0.9 1,620,954 + +2.5 1,620,954 + +0.2 1,620,955 - -1.8 1,620,955 - -1.1 1,620,958 + +0.4 1,620,958 + -0.4 1,620,958 + +1.1 1,620,959 - +1.0 1,620,959 - -1.2 1,620,959 - -1.6 1,620,959 - -0.4 1,620,972 + Psyr_1432 0.11 +1.3 1,621,048 + Psyr_1432 0.35 -0.3 1,621,113 - Psyr_1432 0.54 -0.2 1,621,113 - Psyr_1432 0.54 +0.7 1,621,161 + Psyr_1432 0.69 -0.3 1,621,162 - Psyr_1432 0.69 +0.3 1,621,214 + Psyr_1432 0.85 +0.4 1,621,214 + Psyr_1432 0.85 -0.2 1,621,214 + Psyr_1432 0.85 +0.7 1,621,214 + Psyr_1432 0.85 -1.9 1,621,214 + Psyr_1432 0.85 -0.0 1,621,214 + Psyr_1432 0.85 +1.7 1,621,214 + Psyr_1432 0.85 +0.9 1,621,215 - Psyr_1432 0.86 +0.0 1,621,215 - Psyr_1432 0.86 +0.3 1,621,215 - Psyr_1432 0.86 +0.9 1,621,215 - Psyr_1432 0.86 +0.1 1,621,215 - Psyr_1432 0.86 +0.3 1,621,215 - Psyr_1432 0.86 +0.5 1,621,215 - Psyr_1432 0.86 +0.9 1,621,215 - Psyr_1432 0.86 +0.1 1,621,215 - Psyr_1432 0.86 -1.6 1,621,216 + Psyr_1432 0.86 +0.4 1,621,216 + Psyr_1432 0.86 -0.8 1,621,216 + Psyr_1432 0.86 +0.3 1,621,216 + Psyr_1432 0.86 +0.3 1,621,216 + Psyr_1432 0.86 +1.0 1,621,216 + Psyr_1432 0.86 +2.4 1,621,217 - Psyr_1432 0.86 +0.7 1,621,217 - Psyr_1432 0.86 +0.2 1,621,217 - Psyr_1432 0.86 +0.9 1,621,217 - Psyr_1432 0.86 +0.4 1,621,217 - Psyr_1432 0.86 -0.6 1,621,217 - Psyr_1432 0.86 -0.0 1,621,217 - Psyr_1432 0.86 +2.0 1,621,217 - Psyr_1432 0.86 +2.0 1,621,217 - Psyr_1432 0.86 +0.3 1,621,260 - -0.3 1,621,289 + -0.7 1,621,289 + -0.7 1,621,290 - +0.2 1,621,293 + +3.0 1,621,293 + +0.1 1,621,293 + +2.4 1,621,294 - -1.1 1,621,294 - +1.3 1,621,349 + +0.4 1,621,404 + -0.2 1,621,404 + -0.0 1,621,405 - +0.3 1,621,405 - +0.1 1,621,446 + +0.3 1,621,446 + -1.2 1,621,446 + -0.7 1,621,447 - -1.0 1,621,472 - +1.6 1,621,480 + -1.5 1,621,481 - -0.7 1,621,483 + +0.2 1,621,483 + -1.6 1,621,483 + +0.7 1,621,484 - -0.3 1,621,484 - +0.0 1,621,484 - -0.9 1,621,484 - +0.4 1,621,484 - -0.1 1,621,596 - +0.4 1,621,626 + +2.0 1,621,626 + -1.3 1,621,626 + +1.1 1,621,626 + +1.9 1,621,626 + -0.3 1,621,627 - +2.0 1,621,627 - +2.1 1,621,627 - +0.6 1,621,671 - +1.1 1,621,766 - Psyr_1433 0.16 -0.4 1,621,766 - Psyr_1433 0.16 +0.6 1,621,807 + Psyr_1433 0.19 -0.3 1,621,807 + Psyr_1433 0.19 -0.6 1,621,807 + Psyr_1433 0.19 +0.2 1,621,807 + Psyr_1433 0.19 +0.7 1,621,807 + Psyr_1433 0.19 +1.1 1,621,807 + Psyr_1433 0.19 -0.6 1,621,808 - Psyr_1433 0.19 +2.7 1,621,808 - Psyr_1433 0.19 +0.4 1,621,838 + Psyr_1433 0.21 -0.2 1,621,839 - Psyr_1433 0.21 -1.0 1,621,839 - Psyr_1433 0.21 +0.8 1,621,839 - Psyr_1433 0.21 -0.3 1,621,839 - Psyr_1433 0.21 +1.1 1,621,865 - Psyr_1433 0.23 +0.7 1,621,885 + Psyr_1433 0.25 +0.7 1,621,886 - Psyr_1433 0.25 -0.1 1,621,886 - Psyr_1433 0.25 +0.8 1,621,896 + Psyr_1433 0.25 -0.9 1,621,897 - Psyr_1433 0.26 +0.1 1,621,902 + Psyr_1433 0.26 +0.5 1,621,903 - Psyr_1433 0.26 +1.4 1,621,903 - Psyr_1433 0.26 +1.1 1,621,903 - Psyr_1433 0.26 -0.3 1,622,022 + Psyr_1433 0.34 +0.7 1,622,022 + Psyr_1433 0.34 +2.0 1,622,022 + Psyr_1433 0.34 +0.8 1,622,022 + Psyr_1433 0.34 +0.2 1,622,022 + Psyr_1433 0.34 +0.4 1,622,022 + Psyr_1433 0.34 +0.6 1,622,023 - Psyr_1433 0.34 -0.0 1,622,023 - Psyr_1433 0.34 +0.2 1,622,023 - Psyr_1433 0.34 +0.9 1,622,162 + Psyr_1433 0.44 -0.9 1,622,163 - Psyr_1433 0.44 +1.7 1,622,219 + Psyr_1433 0.48 -0.1
Or see this region's nucleotide sequence