Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1059

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1058 and Psyr_1059 are separated by 26 nucleotidesPsyr_1059 and Psyr_1060 overlap by 4 nucleotides Psyr_1058: Psyr_1058 - Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis, at 1,197,396 to 1,199,006 _1058 Psyr_1059: Psyr_1059 - alginate export porin, at 1,199,033 to 1,200,517 _1059 Psyr_1060: Psyr_1060 - Sel1-like repeat protein, at 1,200,514 to 1,201,926 _1060 Position (kb) 1199 1200 1201Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1198.067 kb on - strand, within Psyr_1058at 1198.120 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.126 kb on + strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.127 kb on - strand, within Psyr_1058at 1198.216 kb on + strand, within Psyr_1058at 1198.217 kb on - strand, within Psyr_1058at 1198.226 kb on + strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.227 kb on - strand, within Psyr_1058at 1198.256 kb on - strand, within Psyr_1058at 1198.345 kb on + strand, within Psyr_1058at 1198.346 kb on - strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.522 kb on + strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.523 kb on - strand, within Psyr_1058at 1198.763 kb on + strand, within Psyr_1058at 1198.765 kb on + strand, within Psyr_1058at 1198.766 kb on - strand, within Psyr_1058at 1198.834 kb on + strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.835 kb on - strand, within Psyr_1058at 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.994 kb on + strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1198.995 kb on - strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.073 kb on + strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.074 kb on - strandat 1199.094 kb on + strandat 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.196 kb on + strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.197 kb on - strand, within Psyr_1059at 1199.269 kb on + strand, within Psyr_1059at 1199.350 kb on - strand, within Psyr_1059at 1199.350 kb on - strand, within Psyr_1059at 1199.367 kb on + strand, within Psyr_1059at 1199.368 kb on - strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.511 kb on + strand, within Psyr_1059at 1199.512 kb on - strand, within Psyr_1059at 1199.512 kb on - strand, within Psyr_1059at 1199.532 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.704 kb on - strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1200.153 kb on + strand, within Psyr_1059at 1200.518 kb on - strandat 1200.744 kb on + strand, within Psyr_1060at 1200.745 kb on - strand, within Psyr_1060at 1200.872 kb on + strand, within Psyr_1060at 1200.872 kb on + strand, within Psyr_1060at 1200.873 kb on - strand, within Psyr_1060at 1200.873 kb on - strand, within Psyr_1060at 1200.888 kb on - strand, within Psyr_1060at 1200.888 kb on - strand, within Psyr_1060at 1200.974 kb on + strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.978 kb on - strand, within Psyr_1060at 1200.978 kb on - strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.038 kb on - strand, within Psyr_1060at 1201.038 kb on - strand, within Psyr_1060at 1201.319 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.404 kb on - strand, within Psyr_1060at 1201.508 kb on + strand, within Psyr_1060

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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1,198,067 - Psyr_1058 0.42 +0.2
1,198,120 + Psyr_1058 0.45 +0.6
1,198,126 + Psyr_1058 0.45 -0.5
1,198,126 + Psyr_1058 0.45 -1.2
1,198,126 + Psyr_1058 0.45 +0.5
1,198,126 + Psyr_1058 0.45 +0.3
1,198,126 + Psyr_1058 0.45 -0.3
1,198,126 + Psyr_1058 0.45 -0.2
1,198,126 + Psyr_1058 0.45 +1.0
1,198,127 - Psyr_1058 0.45 -0.2
1,198,127 - Psyr_1058 0.45 +0.2
1,198,127 - Psyr_1058 0.45 -0.1
1,198,127 - Psyr_1058 0.45 +1.0
1,198,127 - Psyr_1058 0.45 -1.3
1,198,216 + Psyr_1058 0.51 -0.6
1,198,217 - Psyr_1058 0.51 -2.2
1,198,226 + Psyr_1058 0.52 +0.8
1,198,227 - Psyr_1058 0.52 +0.3
1,198,227 - Psyr_1058 0.52 +0.9
1,198,227 - Psyr_1058 0.52 +0.6
1,198,256 - Psyr_1058 0.53 -0.7
1,198,345 + Psyr_1058 0.59 -1.5
1,198,346 - Psyr_1058 0.59 +0.0
1,198,522 + Psyr_1058 0.70 -0.9
1,198,522 + Psyr_1058 0.70 -0.1
1,198,522 + Psyr_1058 0.70 +1.0
1,198,522 + Psyr_1058 0.70 -0.2
1,198,522 + Psyr_1058 0.70 +0.0
1,198,523 - Psyr_1058 0.70 -0.4
1,198,523 - Psyr_1058 0.70 -0.9
1,198,523 - Psyr_1058 0.70 -0.5
1,198,763 + Psyr_1058 0.85 +0.6
1,198,765 + Psyr_1058 0.85 -0.8
1,198,766 - Psyr_1058 0.85 -0.4
1,198,834 + Psyr_1058 0.89 +0.2
1,198,835 - Psyr_1058 0.89 +3.1
1,198,835 - Psyr_1058 0.89 +0.3
1,198,835 - Psyr_1058 0.89 +0.3
1,198,994 + +1.8
1,198,994 + +0.6
1,198,994 + +1.1
1,198,994 + -0.4
1,198,994 + -0.2
1,198,994 + +0.1
1,198,995 - +0.2
1,198,995 - +0.1
1,198,995 - +1.5
1,198,995 - +0.4
1,198,995 - +0.4
1,198,995 - -0.9
1,199,073 + +0.1
1,199,073 + +0.3
1,199,073 + +0.7
1,199,073 + -1.7
1,199,073 + -0.6
1,199,073 + -0.6
1,199,074 - -0.3
1,199,074 - +1.1
1,199,074 - -1.2
1,199,074 - -1.0
1,199,074 - +0.8
1,199,074 - +0.0
1,199,074 - -0.3
1,199,074 - +0.4
1,199,094 + +0.5
1,199,196 + Psyr_1059 0.11 -0.5
1,199,196 + Psyr_1059 0.11 -0.1
1,199,196 + Psyr_1059 0.11 -0.2
1,199,196 + Psyr_1059 0.11 -0.7
1,199,196 + Psyr_1059 0.11 -0.3
1,199,197 - Psyr_1059 0.11 -2.7
1,199,197 - Psyr_1059 0.11 -0.6
1,199,197 - Psyr_1059 0.11 +1.4
1,199,197 - Psyr_1059 0.11 +1.8
1,199,197 - Psyr_1059 0.11 +0.2
1,199,269 + Psyr_1059 0.16 -0.4
1,199,350 - Psyr_1059 0.21 -0.1
1,199,350 - Psyr_1059 0.21 +0.4
1,199,367 + Psyr_1059 0.22 -1.8
1,199,368 - Psyr_1059 0.23 +0.7
1,199,511 + Psyr_1059 0.32 -1.6
1,199,511 + Psyr_1059 0.32 -0.4
1,199,511 + Psyr_1059 0.32 -0.6
1,199,512 - Psyr_1059 0.32 -0.2
1,199,512 - Psyr_1059 0.32 -0.1
1,199,532 + Psyr_1059 0.34 -0.5
1,199,703 + Psyr_1059 0.45 +3.8
1,199,703 + Psyr_1059 0.45 +0.5
1,199,703 + Psyr_1059 0.45 -1.2
1,199,704 - Psyr_1059 0.45 -1.4
1,199,736 + Psyr_1059 0.47 -0.6
1,199,736 + Psyr_1059 0.47 -0.2
1,199,736 + Psyr_1059 0.47 -0.4
1,199,736 + Psyr_1059 0.47 -0.8
1,199,737 - Psyr_1059 0.47 -0.4
1,199,737 - Psyr_1059 0.47 +0.0
1,199,737 - Psyr_1059 0.47 -1.1
1,199,737 - Psyr_1059 0.47 -2.0
1,199,737 - Psyr_1059 0.47 +0.1
1,200,153 + Psyr_1059 0.75 -1.7
1,200,518 - +0.3
1,200,744 + Psyr_1060 0.16 -0.3
1,200,745 - Psyr_1060 0.16 -0.5
1,200,872 + Psyr_1060 0.25 +0.3
1,200,872 + Psyr_1060 0.25 +0.2
1,200,873 - Psyr_1060 0.25 +2.6
1,200,873 - Psyr_1060 0.25 +0.2
1,200,888 - Psyr_1060 0.26 +0.1
1,200,888 - Psyr_1060 0.26 -0.1
1,200,974 + Psyr_1060 0.33 +0.2
1,200,977 + Psyr_1060 0.33 -0.2
1,200,977 + Psyr_1060 0.33 -0.2
1,200,978 - Psyr_1060 0.33 -0.1
1,200,978 - Psyr_1060 0.33 +1.0
1,201,037 + Psyr_1060 0.37 -1.0
1,201,037 + Psyr_1060 0.37 +0.3
1,201,038 - Psyr_1060 0.37 -0.3
1,201,038 - Psyr_1060 0.37 -0.6
1,201,319 + Psyr_1060 0.57 -0.8
1,201,385 + Psyr_1060 0.62 +2.0
1,201,385 + Psyr_1060 0.62 -0.2
1,201,385 + Psyr_1060 0.62 +0.3
1,201,385 + Psyr_1060 0.62 -0.3
1,201,385 + Psyr_1060 0.62 +0.4
1,201,385 + Psyr_1060 0.62 +1.8
1,201,385 + Psyr_1060 0.62 +0.3
1,201,385 + Psyr_1060 0.62 +0.4
1,201,385 + Psyr_1060 0.62 -0.3
1,201,385 + Psyr_1060 0.62 +2.4
1,201,385 + Psyr_1060 0.62 +0.8
1,201,386 - Psyr_1060 0.62 -1.4
1,201,386 - Psyr_1060 0.62 -1.0
1,201,386 - Psyr_1060 0.62 -0.2
1,201,386 - Psyr_1060 0.62 -0.6
1,201,386 - Psyr_1060 0.62 +1.1
1,201,386 - Psyr_1060 0.62 -0.3
1,201,386 - Psyr_1060 0.62 +0.8
1,201,404 - Psyr_1060 0.63 -0.2
1,201,508 + Psyr_1060 0.70 -0.5

Or see this region's nucleotide sequence