Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0128 and Atu0129 are separated by 6 nucleotides Atu0129 and Atu0130 are separated by 4 nucleotides Atu0130 and Atu0131 overlap by 1 nucleotides Atu0131 and Atu0132 are separated by 2 nucleotides
Atu0128: Atu0128 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 132,566 to 133,669
Atu0128
Atu0129: Atu0129 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 133,676 to 134,647
Atu0129
Atu0130: Atu0130 - cytidine deaminase, at 134,652 to 135,056
Atu0130
Atu0131: Atu0131 - purine nucleoside phosphorylase, at 135,056 to 135,856
Atu0131
Atu0132: Atu0132 - 2-deoxyribose-5-phosphate aldolase, at 135,859 to 136,632
Atu0132
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1
2 at 133.671 kb on - strand at 133.741 kb on - strand at 133.881 kb on + strand, within Atu0129 at 133.889 kb on - strand, within Atu0129 at 133.917 kb on + strand, within Atu0129 at 133.990 kb on + strand, within Atu0129 at 134.008 kb on + strand, within Atu0129 at 134.008 kb on + strand, within Atu0129 at 134.013 kb on + strand, within Atu0129 at 134.021 kb on - strand, within Atu0129 at 134.021 kb on - strand, within Atu0129 at 134.023 kb on + strand, within Atu0129 at 134.023 kb on + strand, within Atu0129 at 134.150 kb on + strand, within Atu0129 at 134.150 kb on + strand, within Atu0129 at 134.158 kb on - strand, within Atu0129 at 134.185 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.203 kb on - strand, within Atu0129 at 134.253 kb on - strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.402 kb on - strand, within Atu0129 at 134.416 kb on + strand, within Atu0129 at 134.500 kb on + strand, within Atu0129 at 134.561 kb on + strand at 134.561 kb on + strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.616 kb on - strand at 134.671 kb on + strand at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.860 kb on - strand, within Atu0130 at 135.035 kb on + strand at 135.048 kb on - strand at 135.063 kb on - strand at 135.099 kb on + strand at 135.107 kb on - strand at 135.107 kb on - strand at 135.130 kb on - strand at 135.130 kb on - strand at 135.183 kb on + strand, within Atu0131 at 135.238 kb on + strand, within Atu0131 at 135.266 kb on + strand, within Atu0131 at 135.363 kb on + strand, within Atu0131 at 135.521 kb on + strand, within Atu0131 at 135.656 kb on - strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.815 kb on - strand at 135.864 kb on + strand at 135.913 kb on - strand at 135.920 kb on + strand at 135.938 kb on - strand, within Atu0132 at 136.032 kb on - strand, within Atu0132 at 136.037 kb on - strand, within Atu0132
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 133,671 - -0.5 133,741 - -0.4 133,881 + Atu0129 0.21 -0.5 133,889 - Atu0129 0.22 -0.7 133,917 + Atu0129 0.25 +0.1 133,990 + Atu0129 0.32 -0.3 134,008 + Atu0129 0.34 +0.0 134,008 + Atu0129 0.34 +0.9 134,013 + Atu0129 0.35 +0.6 134,021 - Atu0129 0.35 -0.3 134,021 - Atu0129 0.35 +2.5 134,023 + Atu0129 0.36 -1.0 134,023 + Atu0129 0.36 +0.1 134,150 + Atu0129 0.49 -0.1 134,150 + Atu0129 0.49 +2.3 134,158 - Atu0129 0.50 -0.2 134,185 + Atu0129 0.52 -0.1 134,195 + Atu0129 0.53 -0.0 134,195 + Atu0129 0.53 +0.6 134,203 - Atu0129 0.54 +0.4 134,253 - Atu0129 0.59 +0.5 134,392 + Atu0129 0.74 +2.3 134,392 + Atu0129 0.74 -0.0 134,392 + Atu0129 0.74 +0.3 134,392 + Atu0129 0.74 +0.2 134,402 - Atu0129 0.75 +0.5 134,416 + Atu0129 0.76 -0.1 134,500 + Atu0129 0.85 -0.7 134,561 + +0.3 134,561 + -0.2 134,569 - +0.2 134,569 - -0.8 134,569 - -0.4 134,616 - -0.5 134,671 + +0.4 134,808 + Atu0130 0.39 -0.4 134,808 + Atu0130 0.39 -0.6 134,808 + Atu0130 0.39 -1.1 134,860 - Atu0130 0.51 -0.1 135,035 + -0.5 135,048 - +1.0 135,063 - +0.5 135,099 + +0.5 135,107 - +0.6 135,107 - +0.1 135,130 - -1.6 135,130 - -0.3 135,183 + Atu0131 0.16 -0.8 135,238 + Atu0131 0.23 -0.3 135,266 + Atu0131 0.26 +0.3 135,363 + Atu0131 0.38 -0.5 135,521 + Atu0131 0.58 +2.5 135,656 - Atu0131 0.75 -0.3 135,764 + Atu0131 0.88 +0.4 135,764 + Atu0131 0.88 +0.0 135,772 - Atu0131 0.89 +0.1 135,772 - Atu0131 0.89 +0.4 135,815 - -0.6 135,864 + +0.5 135,913 - -0.4 135,920 + -0.7 135,938 - Atu0132 0.10 +0.2 136,032 - Atu0132 0.22 +0.0 136,037 - Atu0132 0.23 +0.5
Or see this region's nucleotide sequence