Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0488 and Shew_0489 are separated by 277 nucleotides Shew_0489 and Shew_0490 are separated by 118 nucleotides Shew_0490 and Shew_0491 are separated by 81 nucleotides Shew_0491 and Shew_0492 are separated by 129 nucleotides
Shew_0488: Shew_0488 - ArsR family transcriptional regulator (RefSeq), at 544,821 to 545,225
_0488
Shew_0489: Shew_0489 - hypothetical protein (RefSeq), at 545,503 to 545,931
_0489
Shew_0490: Shew_0490 - peptidase S9 prolyl oligopeptidase (RefSeq), at 546,050 to 548,077
_0490
Shew_0491: Shew_0491 - hypothetical protein (RefSeq), at 548,159 to 548,413
_0491
Shew_0492: Shew_0492 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 548,543 to 550,135
_0492
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -1
0
1 at 545.058 kb on - strand, within Shew_0488 at 545.394 kb on + strand at 545.465 kb on + strand at 545.520 kb on + strand at 545.550 kb on + strand, within Shew_0489 at 545.550 kb on + strand, within Shew_0489 at 545.588 kb on + strand, within Shew_0489 at 545.855 kb on + strand, within Shew_0489 at 545.991 kb on + strand at 546.240 kb on + strand at 546.344 kb on - strand, within Shew_0490 at 546.378 kb on - strand, within Shew_0490 at 546.535 kb on + strand, within Shew_0490 at 546.543 kb on - strand, within Shew_0490 at 546.550 kb on + strand, within Shew_0490 at 546.751 kb on - strand, within Shew_0490 at 546.992 kb on - strand, within Shew_0490 at 547.243 kb on + strand, within Shew_0490 at 547.313 kb on - strand, within Shew_0490 at 547.474 kb on - strand, within Shew_0490 at 547.591 kb on + strand, within Shew_0490 at 547.599 kb on - strand, within Shew_0490 at 547.599 kb on - strand, within Shew_0490 at 547.621 kb on + strand, within Shew_0490 at 547.809 kb on + strand, within Shew_0490 at 547.878 kb on + strand at 547.922 kb on + strand at 547.935 kb on - strand at 547.935 kb on - strand at 548.195 kb on - strand, within Shew_0491 at 548.246 kb on + strand, within Shew_0491 at 548.370 kb on + strand, within Shew_0491 at 548.580 kb on + strand at 548.667 kb on - strand at 548.736 kb on + strand, within Shew_0492 at 548.870 kb on - strand, within Shew_0492 at 548.951 kb on + strand, within Shew_0492 at 549.056 kb on + strand, within Shew_0492
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 545,058 - Shew_0488 0.59 -0.1 545,394 + -1.6 545,465 + -0.2 545,520 + +0.1 545,550 + Shew_0489 0.11 -0.1 545,550 + Shew_0489 0.11 +0.0 545,588 + Shew_0489 0.20 -0.2 545,855 + Shew_0489 0.82 -0.4 545,991 + -0.7 546,240 + +0.3 546,344 - Shew_0490 0.14 +0.4 546,378 - Shew_0490 0.16 -0.4 546,535 + Shew_0490 0.24 +0.3 546,543 - Shew_0490 0.24 +0.5 546,550 + Shew_0490 0.25 +0.2 546,751 - Shew_0490 0.35 +0.1 546,992 - Shew_0490 0.46 -1.5 547,243 + Shew_0490 0.59 -1.4 547,313 - Shew_0490 0.62 +1.2 547,474 - Shew_0490 0.70 -0.2 547,591 + Shew_0490 0.76 +0.1 547,599 - Shew_0490 0.76 -0.2 547,599 - Shew_0490 0.76 -1.4 547,621 + Shew_0490 0.77 -1.6 547,809 + Shew_0490 0.87 -0.1 547,878 + -0.8 547,922 + +0.7 547,935 - -0.2 547,935 - -0.5 548,195 - Shew_0491 0.14 -1.6 548,246 + Shew_0491 0.34 -0.1 548,370 + Shew_0491 0.83 +0.2 548,580 + +0.3 548,667 - -0.1 548,736 + Shew_0492 0.12 -0.8 548,870 - Shew_0492 0.21 +0.3 548,951 + Shew_0492 0.26 +0.2 549,056 + Shew_0492 0.32 -0.4
Or see this region's nucleotide sequence