Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30260 and AO356_30265 are separated by 462 nucleotides AO356_30265 and AO356_30270 are separated by 61 nucleotides AO356_30270 and AO356_30275 overlap by 11 nucleotides
AO356_30260: AO356_30260 - hypothetical protein, at 7,063,386 to 7,064,450
_30260
AO356_30265: AO356_30265 - cupin, at 7,064,913 to 7,065,401
_30265
AO356_30270: AO356_30270 - LysR family transcriptional regulator, at 7,065,463 to 7,065,741
_30270
AO356_30275: AO356_30275 - hypothetical protein, at 7,065,731 to 7,066,048
_30275
Position (kb)
7064
7065
7066 Strain fitness (log2 ratio)
-1
0
1
2 at 7064.005 kb on + strand, within AO356_30260 at 7064.005 kb on + strand, within AO356_30260 at 7064.005 kb on + strand, within AO356_30260 at 7064.005 kb on + strand, within AO356_30260 at 7064.005 kb on + strand, within AO356_30260 at 7064.006 kb on - strand, within AO356_30260 at 7064.006 kb on - strand, within AO356_30260 at 7064.006 kb on - strand, within AO356_30260 at 7064.053 kb on + strand, within AO356_30260 at 7064.054 kb on - strand, within AO356_30260 at 7064.057 kb on + strand, within AO356_30260 at 7064.057 kb on + strand, within AO356_30260 at 7064.159 kb on - strand, within AO356_30260 at 7064.251 kb on + strand, within AO356_30260 at 7064.251 kb on + strand, within AO356_30260 at 7064.251 kb on + strand, within AO356_30260 at 7064.252 kb on - strand, within AO356_30260 at 7064.252 kb on - strand, within AO356_30260 at 7064.285 kb on + strand, within AO356_30260 at 7064.286 kb on - strand, within AO356_30260 at 7064.295 kb on + strand, within AO356_30260 at 7064.295 kb on + strand, within AO356_30260 at 7064.295 kb on + strand, within AO356_30260 at 7064.315 kb on + strand, within AO356_30260 at 7064.316 kb on - strand, within AO356_30260 at 7064.352 kb on - strand at 7064.397 kb on - strand at 7064.430 kb on + strand at 7064.430 kb on + strand at 7064.431 kb on - strand at 7064.504 kb on + strand at 7064.504 kb on + strand at 7064.505 kb on - strand at 7064.568 kb on + strand at 7064.568 kb on + strand at 7064.569 kb on - strand at 7064.569 kb on - strand at 7064.575 kb on - strand at 7064.575 kb on - strand at 7064.575 kb on - strand at 7064.720 kb on + strand at 7064.723 kb on + strand at 7064.847 kb on + strand at 7064.881 kb on + strand at 7064.881 kb on + strand at 7064.930 kb on - strand at 7064.942 kb on + strand at 7064.980 kb on - strand, within AO356_30265 at 7065.040 kb on - strand, within AO356_30265 at 7065.231 kb on + strand, within AO356_30265 at 7065.232 kb on - strand, within AO356_30265 at 7065.371 kb on + strand at 7065.394 kb on - strand at 7065.406 kb on - strand at 7065.475 kb on + strand at 7065.475 kb on + strand at 7065.475 kb on + strand at 7065.475 kb on + strand at 7065.475 kb on + strand at 7065.476 kb on - strand at 7065.476 kb on - strand at 7065.476 kb on - strand at 7065.476 kb on - strand at 7065.477 kb on + strand at 7065.478 kb on - strand at 7065.478 kb on - strand at 7065.583 kb on - strand, within AO356_30270 at 7065.610 kb on - strand, within AO356_30270 at 7065.610 kb on - strand, within AO356_30270 at 7065.612 kb on + strand, within AO356_30270 at 7065.612 kb on + strand, within AO356_30270 at 7065.613 kb on - strand, within AO356_30270 at 7065.632 kb on - strand, within AO356_30270 at 7065.674 kb on + strand, within AO356_30270 at 7065.718 kb on - strand at 7065.926 kb on - strand, within AO356_30275 at 7065.926 kb on - strand, within AO356_30275 at 7065.926 kb on - strand, within AO356_30275 at 7066.031 kb on - strand at 7066.075 kb on - strand at 7066.193 kb on + strand at 7066.196 kb on - strand at 7066.341 kb on + strand at 7066.357 kb on + strand at 7066.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 7,064,005 + AO356_30260 0.58 -0.3 7,064,005 + AO356_30260 0.58 -0.4 7,064,005 + AO356_30260 0.58 +0.2 7,064,005 + AO356_30260 0.58 -0.5 7,064,005 + AO356_30260 0.58 +0.2 7,064,006 - AO356_30260 0.58 +0.6 7,064,006 - AO356_30260 0.58 +0.3 7,064,006 - AO356_30260 0.58 -0.5 7,064,053 + AO356_30260 0.63 +0.3 7,064,054 - AO356_30260 0.63 -0.3 7,064,057 + AO356_30260 0.63 -1.4 7,064,057 + AO356_30260 0.63 -0.4 7,064,159 - AO356_30260 0.73 -0.1 7,064,251 + AO356_30260 0.81 -0.5 7,064,251 + AO356_30260 0.81 -0.5 7,064,251 + AO356_30260 0.81 -0.6 7,064,252 - AO356_30260 0.81 -1.1 7,064,252 - AO356_30260 0.81 +0.3 7,064,285 + AO356_30260 0.84 +0.8 7,064,286 - AO356_30260 0.85 -0.8 7,064,295 + AO356_30260 0.85 +1.1 7,064,295 + AO356_30260 0.85 +0.1 7,064,295 + AO356_30260 0.85 -0.5 7,064,315 + AO356_30260 0.87 +0.3 7,064,316 - AO356_30260 0.87 -0.2 7,064,352 - -0.0 7,064,397 - +1.4 7,064,430 + +1.9 7,064,430 + +0.3 7,064,431 - -0.6 7,064,504 + -0.5 7,064,504 + -0.0 7,064,505 - -1.0 7,064,568 + -1.3 7,064,568 + -0.5 7,064,569 - +0.4 7,064,569 - -0.3 7,064,575 - +1.0 7,064,575 - +0.2 7,064,575 - +0.1 7,064,720 + +0.1 7,064,723 + +0.8 7,064,847 + +0.4 7,064,881 + +0.5 7,064,881 + +0.4 7,064,930 - -0.4 7,064,942 + +1.3 7,064,980 - AO356_30265 0.14 +1.1 7,065,040 - AO356_30265 0.26 -0.1 7,065,231 + AO356_30265 0.65 +0.6 7,065,232 - AO356_30265 0.65 +0.3 7,065,371 + +0.3 7,065,394 - -0.3 7,065,406 - -0.2 7,065,475 + -0.3 7,065,475 + +0.2 7,065,475 + -1.3 7,065,475 + -0.4 7,065,475 + +0.2 7,065,476 - -0.2 7,065,476 - +0.3 7,065,476 - +0.2 7,065,476 - -0.1 7,065,477 + +0.6 7,065,478 - +0.6 7,065,478 - +1.0 7,065,583 - AO356_30270 0.43 +0.5 7,065,610 - AO356_30270 0.53 +0.4 7,065,610 - AO356_30270 0.53 +1.6 7,065,612 + AO356_30270 0.53 +0.5 7,065,612 + AO356_30270 0.53 -0.1 7,065,613 - AO356_30270 0.54 +1.1 7,065,632 - AO356_30270 0.61 -0.7 7,065,674 + AO356_30270 0.76 -0.6 7,065,718 - +0.2 7,065,926 - AO356_30275 0.61 -1.6 7,065,926 - AO356_30275 0.61 +0.9 7,065,926 - AO356_30275 0.61 +0.9 7,066,031 - -0.3 7,066,075 - +0.2 7,066,193 + -0.5 7,066,196 - +0.3 7,066,341 + +1.9 7,066,357 + -0.2 7,066,357 + +0.1
Or see this region's nucleotide sequence