Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25590 and AO356_25595 overlap by 4 nucleotides AO356_25595 and AO356_25600 are separated by 184 nucleotides AO356_25600 and AO356_25605 are separated by 62 nucleotides AO356_25605 and AO356_25610 are separated by 0 nucleotides
AO356_25590: AO356_25590 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 5,784,391 to 5,785,161
_25590
AO356_25595: AO356_25595 - 4-hydroxyphenylacetate isomerase, at 5,785,158 to 5,785,835
_25595
AO356_25600: AO356_25600 - AraC family transcriptional regulator, at 5,786,020 to 5,786,925
_25600
AO356_25605: AO356_25605 - transcriptional regulator, at 5,786,988 to 5,787,410
_25605
AO356_25610: AO356_25610 - hypothetical protein, at 5,787,411 to 5,788,283
_25610
Position (kb)
5786
5787 Strain fitness (log2 ratio)
-1
0
1 at 5785.094 kb on - strand at 5785.248 kb on + strand, within AO356_25595 at 5785.249 kb on - strand, within AO356_25595 at 5785.249 kb on - strand, within AO356_25595 at 5785.393 kb on + strand, within AO356_25595 at 5785.504 kb on + strand, within AO356_25595 at 5785.505 kb on - strand, within AO356_25595 at 5785.505 kb on - strand, within AO356_25595 at 5785.505 kb on - strand, within AO356_25595 at 5785.505 kb on - strand, within AO356_25595 at 5785.544 kb on - strand, within AO356_25595 at 5785.777 kb on + strand at 5786.002 kb on - strand at 5786.065 kb on + strand at 5786.066 kb on - strand at 5786.066 kb on - strand at 5786.066 kb on - strand at 5786.077 kb on + strand at 5786.098 kb on + strand at 5786.099 kb on - strand at 5786.180 kb on - strand, within AO356_25600 at 5786.207 kb on - strand, within AO356_25600 at 5786.224 kb on + strand, within AO356_25600 at 5786.224 kb on + strand, within AO356_25600 at 5786.225 kb on - strand, within AO356_25600 at 5786.481 kb on - strand, within AO356_25600 at 5786.481 kb on - strand, within AO356_25600 at 5786.848 kb on + strand at 5786.954 kb on - strand at 5786.954 kb on - strand at 5787.463 kb on + strand at 5787.463 kb on + strand at 5787.464 kb on - strand at 5787.464 kb on - strand at 5787.464 kb on - strand at 5787.503 kb on - strand, within AO356_25610 at 5787.808 kb on - strand, within AO356_25610 at 5787.853 kb on + strand, within AO356_25610 at 5787.854 kb on - strand, within AO356_25610
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,785,094 - -0.0 5,785,248 + AO356_25595 0.13 -0.4 5,785,249 - AO356_25595 0.13 -0.3 5,785,249 - AO356_25595 0.13 -0.1 5,785,393 + AO356_25595 0.35 +0.6 5,785,504 + AO356_25595 0.51 +0.5 5,785,505 - AO356_25595 0.51 +0.5 5,785,505 - AO356_25595 0.51 -0.1 5,785,505 - AO356_25595 0.51 +0.4 5,785,505 - AO356_25595 0.51 +0.2 5,785,544 - AO356_25595 0.57 -0.2 5,785,777 + +0.5 5,786,002 - -0.4 5,786,065 + -1.3 5,786,066 - +0.8 5,786,066 - -0.7 5,786,066 - -1.7 5,786,077 + +0.2 5,786,098 + +0.1 5,786,099 - +0.4 5,786,180 - AO356_25600 0.18 +0.8 5,786,207 - AO356_25600 0.21 +1.3 5,786,224 + AO356_25600 0.23 +0.4 5,786,224 + AO356_25600 0.23 -0.0 5,786,225 - AO356_25600 0.23 -0.4 5,786,481 - AO356_25600 0.51 +0.7 5,786,481 - AO356_25600 0.51 -0.5 5,786,848 + -0.5 5,786,954 - -1.0 5,786,954 - -0.5 5,787,463 + -0.1 5,787,463 + -1.1 5,787,464 - +0.1 5,787,464 - +0.9 5,787,464 - +0.9 5,787,503 - AO356_25610 0.11 -0.7 5,787,808 - AO356_25610 0.45 +0.8 5,787,853 + AO356_25610 0.51 +0.5 5,787,854 - AO356_25610 0.51 -0.4
Or see this region's nucleotide sequence