Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25600

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25590 and AO356_25595 overlap by 4 nucleotidesAO356_25595 and AO356_25600 are separated by 184 nucleotidesAO356_25600 and AO356_25605 are separated by 62 nucleotidesAO356_25605 and AO356_25610 are separated by 0 nucleotides AO356_25590: AO356_25590 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 5,784,391 to 5,785,161 _25590 AO356_25595: AO356_25595 - 4-hydroxyphenylacetate isomerase, at 5,785,158 to 5,785,835 _25595 AO356_25600: AO356_25600 - AraC family transcriptional regulator, at 5,786,020 to 5,786,925 _25600 AO356_25605: AO356_25605 - transcriptional regulator, at 5,786,988 to 5,787,410 _25605 AO356_25610: AO356_25610 - hypothetical protein, at 5,787,411 to 5,788,283 _25610 Position (kb) 5786 5787Strain fitness (log2 ratio) -1 0 1at 5785.094 kb on - strandat 5785.248 kb on + strand, within AO356_25595at 5785.249 kb on - strand, within AO356_25595at 5785.249 kb on - strand, within AO356_25595at 5785.393 kb on + strand, within AO356_25595at 5785.504 kb on + strand, within AO356_25595at 5785.505 kb on - strand, within AO356_25595at 5785.505 kb on - strand, within AO356_25595at 5785.505 kb on - strand, within AO356_25595at 5785.505 kb on - strand, within AO356_25595at 5785.544 kb on - strand, within AO356_25595at 5785.777 kb on + strandat 5786.002 kb on - strandat 5786.065 kb on + strandat 5786.066 kb on - strandat 5786.066 kb on - strandat 5786.066 kb on - strandat 5786.077 kb on + strandat 5786.098 kb on + strandat 5786.099 kb on - strandat 5786.180 kb on - strand, within AO356_25600at 5786.207 kb on - strand, within AO356_25600at 5786.224 kb on + strand, within AO356_25600at 5786.224 kb on + strand, within AO356_25600at 5786.225 kb on - strand, within AO356_25600at 5786.481 kb on - strand, within AO356_25600at 5786.481 kb on - strand, within AO356_25600at 5786.848 kb on + strandat 5786.954 kb on - strandat 5786.954 kb on - strandat 5787.463 kb on + strandat 5787.463 kb on + strandat 5787.464 kb on - strandat 5787.464 kb on - strandat 5787.464 kb on - strandat 5787.503 kb on - strand, within AO356_25610at 5787.808 kb on - strand, within AO356_25610at 5787.853 kb on + strand, within AO356_25610at 5787.854 kb on - strand, within AO356_25610

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,785,094 - -0.0
5,785,248 + AO356_25595 0.13 -0.4
5,785,249 - AO356_25595 0.13 -0.3
5,785,249 - AO356_25595 0.13 -0.1
5,785,393 + AO356_25595 0.35 +0.6
5,785,504 + AO356_25595 0.51 +0.5
5,785,505 - AO356_25595 0.51 +0.5
5,785,505 - AO356_25595 0.51 -0.1
5,785,505 - AO356_25595 0.51 +0.4
5,785,505 - AO356_25595 0.51 +0.2
5,785,544 - AO356_25595 0.57 -0.2
5,785,777 + +0.5
5,786,002 - -0.4
5,786,065 + -1.3
5,786,066 - +0.8
5,786,066 - -0.7
5,786,066 - -1.7
5,786,077 + +0.2
5,786,098 + +0.1
5,786,099 - +0.4
5,786,180 - AO356_25600 0.18 +0.8
5,786,207 - AO356_25600 0.21 +1.3
5,786,224 + AO356_25600 0.23 +0.4
5,786,224 + AO356_25600 0.23 -0.0
5,786,225 - AO356_25600 0.23 -0.4
5,786,481 - AO356_25600 0.51 +0.7
5,786,481 - AO356_25600 0.51 -0.5
5,786,848 + -0.5
5,786,954 - -1.0
5,786,954 - -0.5
5,787,463 + -0.1
5,787,463 + -1.1
5,787,464 - +0.1
5,787,464 - +0.9
5,787,464 - +0.9
5,787,503 - AO356_25610 0.11 -0.7
5,787,808 - AO356_25610 0.45 +0.8
5,787,853 + AO356_25610 0.51 +0.5
5,787,854 - AO356_25610 0.51 -0.4

Or see this region's nucleotide sequence