Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25125 and AO356_25130 are separated by 22 nucleotides AO356_25130 and AO356_25135 are separated by 140 nucleotides AO356_25135 and AO356_25140 are separated by 158 nucleotides
AO356_25125: AO356_25125 - short-chain dehydrogenase, at 5,686,924 to 5,688,114
_25125
AO356_25130: AO356_25130 - hypothetical protein, at 5,688,137 to 5,688,577
_25130
AO356_25135: AO356_25135 - iron-sulfur cluster repair di-iron protein, at 5,688,718 to 5,689,392
_25135
AO356_25140: AO356_25140 - transcriptional regulator, at 5,689,551 to 5,691,083
_25140
Position (kb) 5688
5689 Strain fitness (log2 ratio) -1
0
1 at 5687.372 kb on + strand, within AO356_25125 at 5687.614 kb on + strand, within AO356_25125 at 5687.614 kb on + strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5688.055 kb on + strand at 5688.144 kb on - strand at 5688.215 kb on - strand, within AO356_25130 at 5688.324 kb on - strand, within AO356_25130 at 5688.458 kb on + strand, within AO356_25130 at 5688.459 kb on - strand, within AO356_25130 at 5688.563 kb on + strand at 5688.564 kb on - strand at 5688.564 kb on - strand at 5688.813 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135 at 5689.313 kb on + strand, within AO356_25135 at 5689.313 kb on + strand, within AO356_25135 at 5689.313 kb on + strand, within AO356_25135 at 5689.314 kb on - strand, within AO356_25135 at 5689.314 kb on - strand, within AO356_25135 at 5689.314 kb on - strand, within AO356_25135 at 5689.314 kb on - strand, within AO356_25135 at 5689.326 kb on + strand at 5689.326 kb on + strand at 5689.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,687,372 + AO356_25125 0.38 +0.2 5,687,614 + AO356_25125 0.58 -0.6 5,687,614 + AO356_25125 0.58 +0.2 5,687,615 - AO356_25125 0.58 +0.2 5,687,615 - AO356_25125 0.58 -0.1 5,687,615 - AO356_25125 0.58 +1.0 5,687,615 - AO356_25125 0.58 +1.0 5,687,615 - AO356_25125 0.58 +0.3 5,687,615 - AO356_25125 0.58 +0.1 5,687,615 - AO356_25125 0.58 +0.4 5,688,055 + +1.5 5,688,144 - +0.7 5,688,215 - AO356_25130 0.18 +0.9 5,688,324 - AO356_25130 0.42 +0.9 5,688,458 + AO356_25130 0.73 +0.1 5,688,459 - AO356_25130 0.73 +0.5 5,688,563 + -0.0 5,688,564 - -0.2 5,688,564 - -0.2 5,688,813 - AO356_25135 0.14 +0.2 5,689,017 - AO356_25135 0.44 +0.2 5,689,017 - AO356_25135 0.44 -0.2 5,689,017 - AO356_25135 0.44 +0.0 5,689,313 + AO356_25135 0.88 -0.2 5,689,313 + AO356_25135 0.88 +0.0 5,689,313 + AO356_25135 0.88 +0.3 5,689,314 - AO356_25135 0.88 +0.1 5,689,314 - AO356_25135 0.88 -0.6 5,689,314 - AO356_25135 0.88 +0.3 5,689,314 - AO356_25135 0.88 +0.2 5,689,326 + +0.5 5,689,326 + +0.3 5,689,327 - -1.4
Or see this region's nucleotide sequence