Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22865 and AO356_22870 are separated by 284 nucleotides AO356_22870 and AO356_22875 are separated by 188 nucleotides
AO356_22865: AO356_22865 - CdaR family transcriptional regulator, at 5,102,841 to 5,103,965
_22865
AO356_22870: AO356_22870 - glycerate kinase, at 5,104,250 to 5,105,386
_22870
AO356_22875: AO356_22875 - chemotaxis protein, at 5,105,575 to 5,107,200
_22875
Position (kb)
5104
5105
5106 Strain fitness (log2 ratio)
-2
-1
0
1 at 5103.334 kb on - strand, within AO356_22865 at 5103.918 kb on + strand at 5103.918 kb on + strand at 5103.918 kb on + strand at 5103.919 kb on - strand at 5103.919 kb on - strand at 5103.919 kb on - strand at 5103.919 kb on - strand at 5103.963 kb on + strand at 5103.963 kb on + strand at 5104.010 kb on + strand at 5104.010 kb on + strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.015 kb on - strand at 5104.075 kb on + strand at 5104.075 kb on + strand at 5104.076 kb on - strand at 5104.146 kb on - strand at 5104.164 kb on + strand at 5104.246 kb on + strand at 5104.246 kb on + strand at 5104.246 kb on + strand at 5104.246 kb on + strand at 5104.247 kb on - strand at 5104.249 kb on + strand at 5104.250 kb on - strand at 5104.584 kb on - strand, within AO356_22870 at 5104.584 kb on - strand, within AO356_22870 at 5104.584 kb on - strand, within AO356_22870 at 5105.249 kb on + strand, within AO356_22870 at 5105.250 kb on - strand, within AO356_22870 at 5105.250 kb on - strand, within AO356_22870 at 5105.400 kb on + strand at 5105.400 kb on + strand at 5105.400 kb on + strand at 5105.449 kb on - strand at 5105.492 kb on - strand at 5105.516 kb on + strand at 5105.516 kb on + strand at 5105.529 kb on - strand at 5105.583 kb on - strand at 5105.657 kb on + strand at 5105.878 kb on + strand, within AO356_22875 at 5105.917 kb on + strand, within AO356_22875 at 5105.918 kb on - strand, within AO356_22875 at 5105.948 kb on - strand, within AO356_22875 at 5106.022 kb on - strand, within AO356_22875 at 5106.066 kb on + strand, within AO356_22875 at 5106.067 kb on - strand, within AO356_22875 at 5106.086 kb on + strand, within AO356_22875 at 5106.086 kb on + strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.087 kb on - strand, within AO356_22875 at 5106.127 kb on + strand, within AO356_22875 at 5106.127 kb on + strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875 at 5106.128 kb on - strand, within AO356_22875
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,103,334 - AO356_22865 0.44 -1.8 5,103,918 + -0.7 5,103,918 + +0.0 5,103,918 + -0.1 5,103,919 - -0.2 5,103,919 - +0.2 5,103,919 - +0.5 5,103,919 - +0.4 5,103,963 + +0.4 5,103,963 + +0.3 5,104,010 + -1.1 5,104,010 + -0.5 5,104,015 - +1.2 5,104,015 - -0.3 5,104,015 - +1.1 5,104,015 - -0.4 5,104,015 - -0.1 5,104,015 - +0.6 5,104,015 - +0.8 5,104,015 - +1.3 5,104,015 - -0.2 5,104,015 - +0.3 5,104,015 - +0.2 5,104,075 + +0.5 5,104,075 + -0.4 5,104,076 - -1.3 5,104,146 - -0.4 5,104,164 + +0.7 5,104,246 + +0.8 5,104,246 + -0.8 5,104,246 + -0.1 5,104,246 + +0.2 5,104,247 - -0.4 5,104,249 + -0.5 5,104,250 - -1.4 5,104,584 - AO356_22870 0.29 +1.0 5,104,584 - AO356_22870 0.29 +1.5 5,104,584 - AO356_22870 0.29 +0.6 5,105,249 + AO356_22870 0.88 -0.3 5,105,250 - AO356_22870 0.88 +0.4 5,105,250 - AO356_22870 0.88 +0.3 5,105,400 + +0.5 5,105,400 + -0.0 5,105,400 + -0.4 5,105,449 - +0.8 5,105,492 - -1.4 5,105,516 + +0.1 5,105,516 + +0.1 5,105,529 - -0.7 5,105,583 - +0.6 5,105,657 + +0.2 5,105,878 + AO356_22875 0.19 -0.7 5,105,917 + AO356_22875 0.21 +0.3 5,105,918 - AO356_22875 0.21 +1.1 5,105,948 - AO356_22875 0.23 +0.2 5,106,022 - AO356_22875 0.27 -0.4 5,106,066 + AO356_22875 0.30 +0.7 5,106,067 - AO356_22875 0.30 -1.1 5,106,086 + AO356_22875 0.31 -1.2 5,106,086 + AO356_22875 0.31 +0.7 5,106,087 - AO356_22875 0.31 +0.2 5,106,087 - AO356_22875 0.31 +0.4 5,106,087 - AO356_22875 0.31 +0.9 5,106,087 - AO356_22875 0.31 -0.1 5,106,127 + AO356_22875 0.34 +0.8 5,106,127 + AO356_22875 0.34 -0.7 5,106,128 - AO356_22875 0.34 +1.1 5,106,128 - AO356_22875 0.34 -0.0 5,106,128 - AO356_22875 0.34 -0.3
Or see this region's nucleotide sequence