Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22870

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22865 and AO356_22870 are separated by 284 nucleotidesAO356_22870 and AO356_22875 are separated by 188 nucleotides AO356_22865: AO356_22865 - CdaR family transcriptional regulator, at 5,102,841 to 5,103,965 _22865 AO356_22870: AO356_22870 - glycerate kinase, at 5,104,250 to 5,105,386 _22870 AO356_22875: AO356_22875 - chemotaxis protein, at 5,105,575 to 5,107,200 _22875 Position (kb) 5104 5105 5106Strain fitness (log2 ratio) -2 -1 0 1at 5103.334 kb on - strand, within AO356_22865at 5103.918 kb on + strandat 5103.918 kb on + strandat 5103.918 kb on + strandat 5103.919 kb on - strandat 5103.919 kb on - strandat 5103.919 kb on - strandat 5103.919 kb on - strandat 5103.963 kb on + strandat 5103.963 kb on + strandat 5104.010 kb on + strandat 5104.010 kb on + strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.015 kb on - strandat 5104.075 kb on + strandat 5104.075 kb on + strandat 5104.076 kb on - strandat 5104.146 kb on - strandat 5104.164 kb on + strandat 5104.246 kb on + strandat 5104.246 kb on + strandat 5104.246 kb on + strandat 5104.246 kb on + strandat 5104.247 kb on - strandat 5104.249 kb on + strandat 5104.250 kb on - strandat 5104.584 kb on - strand, within AO356_22870at 5104.584 kb on - strand, within AO356_22870at 5104.584 kb on - strand, within AO356_22870at 5105.249 kb on + strand, within AO356_22870at 5105.250 kb on - strand, within AO356_22870at 5105.250 kb on - strand, within AO356_22870at 5105.400 kb on + strandat 5105.400 kb on + strandat 5105.400 kb on + strandat 5105.449 kb on - strandat 5105.492 kb on - strandat 5105.516 kb on + strandat 5105.516 kb on + strandat 5105.529 kb on - strandat 5105.583 kb on - strandat 5105.657 kb on + strandat 5105.878 kb on + strand, within AO356_22875at 5105.917 kb on + strand, within AO356_22875at 5105.918 kb on - strand, within AO356_22875at 5105.948 kb on - strand, within AO356_22875at 5106.022 kb on - strand, within AO356_22875at 5106.066 kb on + strand, within AO356_22875at 5106.067 kb on - strand, within AO356_22875at 5106.086 kb on + strand, within AO356_22875at 5106.086 kb on + strand, within AO356_22875at 5106.087 kb on - strand, within AO356_22875at 5106.087 kb on - strand, within AO356_22875at 5106.087 kb on - strand, within AO356_22875at 5106.087 kb on - strand, within AO356_22875at 5106.127 kb on + strand, within AO356_22875at 5106.127 kb on + strand, within AO356_22875at 5106.128 kb on - strand, within AO356_22875at 5106.128 kb on - strand, within AO356_22875at 5106.128 kb on - strand, within AO356_22875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,103,334 - AO356_22865 0.44 -1.8
5,103,918 + -0.7
5,103,918 + +0.0
5,103,918 + -0.1
5,103,919 - -0.2
5,103,919 - +0.2
5,103,919 - +0.5
5,103,919 - +0.4
5,103,963 + +0.4
5,103,963 + +0.3
5,104,010 + -1.1
5,104,010 + -0.5
5,104,015 - +1.2
5,104,015 - -0.3
5,104,015 - +1.1
5,104,015 - -0.4
5,104,015 - -0.1
5,104,015 - +0.6
5,104,015 - +0.8
5,104,015 - +1.3
5,104,015 - -0.2
5,104,015 - +0.3
5,104,015 - +0.2
5,104,075 + +0.5
5,104,075 + -0.4
5,104,076 - -1.3
5,104,146 - -0.4
5,104,164 + +0.7
5,104,246 + +0.8
5,104,246 + -0.8
5,104,246 + -0.1
5,104,246 + +0.2
5,104,247 - -0.4
5,104,249 + -0.5
5,104,250 - -1.4
5,104,584 - AO356_22870 0.29 +1.0
5,104,584 - AO356_22870 0.29 +1.5
5,104,584 - AO356_22870 0.29 +0.6
5,105,249 + AO356_22870 0.88 -0.3
5,105,250 - AO356_22870 0.88 +0.4
5,105,250 - AO356_22870 0.88 +0.3
5,105,400 + +0.5
5,105,400 + -0.0
5,105,400 + -0.4
5,105,449 - +0.8
5,105,492 - -1.4
5,105,516 + +0.1
5,105,516 + +0.1
5,105,529 - -0.7
5,105,583 - +0.6
5,105,657 + +0.2
5,105,878 + AO356_22875 0.19 -0.7
5,105,917 + AO356_22875 0.21 +0.3
5,105,918 - AO356_22875 0.21 +1.1
5,105,948 - AO356_22875 0.23 +0.2
5,106,022 - AO356_22875 0.27 -0.4
5,106,066 + AO356_22875 0.30 +0.7
5,106,067 - AO356_22875 0.30 -1.1
5,106,086 + AO356_22875 0.31 -1.2
5,106,086 + AO356_22875 0.31 +0.7
5,106,087 - AO356_22875 0.31 +0.2
5,106,087 - AO356_22875 0.31 +0.4
5,106,087 - AO356_22875 0.31 +0.9
5,106,087 - AO356_22875 0.31 -0.1
5,106,127 + AO356_22875 0.34 +0.8
5,106,127 + AO356_22875 0.34 -0.7
5,106,128 - AO356_22875 0.34 +1.1
5,106,128 - AO356_22875 0.34 -0.0
5,106,128 - AO356_22875 0.34 -0.3

Or see this region's nucleotide sequence