Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21440

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21435 and AO356_21440 are separated by 63 nucleotidesAO356_21440 and AO356_21445 are separated by 265 nucleotides AO356_21435: AO356_21435 - pseudouridine synthase, at 4,807,621 to 4,808,445 _21435 AO356_21440: AO356_21440 - N-(5'-phosphoribosyl)anthranilate isomerase, at 4,808,509 to 4,809,132 _21440 AO356_21445: AO356_21445 - acetyl-CoA carboxylase subunit beta, at 4,809,398 to 4,810,318 _21445 Position (kb) 4808 4809 4810Strain fitness (log2 ratio) -2 -1 0 1at 4807.524 kb on + strandat 4807.524 kb on + strandat 4807.524 kb on + strandat 4807.525 kb on - strandat 4807.525 kb on - strandat 4807.525 kb on - strandat 4807.551 kb on + strandat 4807.551 kb on + strandat 4807.552 kb on - strandat 4807.552 kb on - strandat 4807.552 kb on - strandat 4807.552 kb on - strandat 4807.553 kb on + strandat 4807.553 kb on + strandat 4807.553 kb on + strandat 4807.553 kb on + strandat 4807.554 kb on - strandat 4807.585 kb on - strandat 4807.599 kb on + strandat 4807.601 kb on + strandat 4807.602 kb on - strandat 4807.602 kb on - strandat 4807.663 kb on + strandat 4807.663 kb on + strandat 4807.663 kb on + strandat 4807.664 kb on - strandat 4807.709 kb on + strand, within AO356_21435at 4807.710 kb on - strand, within AO356_21435at 4807.973 kb on - strand, within AO356_21435at 4807.981 kb on + strand, within AO356_21435at 4807.982 kb on - strand, within AO356_21435at 4808.074 kb on + strand, within AO356_21435at 4808.075 kb on - strand, within AO356_21435at 4808.350 kb on + strand, within AO356_21435at 4808.351 kb on - strand, within AO356_21435at 4808.351 kb on - strand, within AO356_21435at 4808.398 kb on + strandat 4808.399 kb on - strandat 4808.466 kb on - strandat 4808.466 kb on - strandat 4808.502 kb on - strandat 4808.605 kb on + strand, within AO356_21440at 4808.605 kb on + strand, within AO356_21440at 4808.605 kb on + strand, within AO356_21440at 4808.606 kb on - strand, within AO356_21440at 4808.606 kb on - strand, within AO356_21440at 4808.606 kb on - strand, within AO356_21440at 4808.684 kb on + strand, within AO356_21440at 4808.806 kb on + strand, within AO356_21440at 4808.806 kb on + strand, within AO356_21440at 4808.808 kb on + strand, within AO356_21440at 4808.809 kb on - strand, within AO356_21440at 4808.896 kb on + strand, within AO356_21440at 4808.896 kb on + strand, within AO356_21440at 4808.896 kb on + strand, within AO356_21440at 4808.896 kb on + strand, within AO356_21440at 4808.896 kb on + strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4808.897 kb on - strand, within AO356_21440at 4809.131 kb on - strandat 4809.166 kb on + strandat 4809.166 kb on + strandat 4809.177 kb on + strandat 4809.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,807,524 + +1.7
4,807,524 + -1.0
4,807,524 + +0.4
4,807,525 - -0.1
4,807,525 - +1.1
4,807,525 - -2.5
4,807,551 + +0.4
4,807,551 + -0.0
4,807,552 - +0.7
4,807,552 - +0.9
4,807,552 - -0.6
4,807,552 - +0.5
4,807,553 + -1.5
4,807,553 + +0.0
4,807,553 + -0.5
4,807,553 + +0.7
4,807,554 - -2.4
4,807,585 - +0.2
4,807,599 + -0.7
4,807,601 + -0.7
4,807,602 - +0.8
4,807,602 - -1.0
4,807,663 + +0.9
4,807,663 + +1.4
4,807,663 + -0.2
4,807,664 - +1.0
4,807,709 + AO356_21435 0.11 -0.6
4,807,710 - AO356_21435 0.11 -0.3
4,807,973 - AO356_21435 0.43 -0.1
4,807,981 + AO356_21435 0.44 -0.1
4,807,982 - AO356_21435 0.44 +0.8
4,808,074 + AO356_21435 0.55 +0.1
4,808,075 - AO356_21435 0.55 +0.1
4,808,350 + AO356_21435 0.88 -1.3
4,808,351 - AO356_21435 0.88 -0.8
4,808,351 - AO356_21435 0.88 -0.3
4,808,398 + -0.2
4,808,399 - +0.4
4,808,466 - -0.4
4,808,466 - +0.1
4,808,502 - -1.7
4,808,605 + AO356_21440 0.15 +0.3
4,808,605 + AO356_21440 0.15 -0.4
4,808,605 + AO356_21440 0.15 +1.5
4,808,606 - AO356_21440 0.16 +0.6
4,808,606 - AO356_21440 0.16 +1.4
4,808,606 - AO356_21440 0.16 +0.3
4,808,684 + AO356_21440 0.28 +0.5
4,808,806 + AO356_21440 0.48 -0.5
4,808,806 + AO356_21440 0.48 +0.3
4,808,808 + AO356_21440 0.48 +1.3
4,808,809 - AO356_21440 0.48 +1.0
4,808,896 + AO356_21440 0.62 -0.0
4,808,896 + AO356_21440 0.62 -0.0
4,808,896 + AO356_21440 0.62 +0.0
4,808,896 + AO356_21440 0.62 +0.6
4,808,896 + AO356_21440 0.62 +0.8
4,808,897 - AO356_21440 0.62 +0.2
4,808,897 - AO356_21440 0.62 +1.0
4,808,897 - AO356_21440 0.62 -0.3
4,808,897 - AO356_21440 0.62 -0.1
4,808,897 - AO356_21440 0.62 -0.4
4,808,897 - AO356_21440 0.62 -0.2
4,808,897 - AO356_21440 0.62 -0.1
4,808,897 - AO356_21440 0.62 +0.4
4,808,897 - AO356_21440 0.62 +0.8
4,809,131 - +0.5
4,809,166 + +0.1
4,809,166 + -0.1
4,809,177 + +0.2
4,809,218 + +0.2

Or see this region's nucleotide sequence