Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20045

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20035 and AO356_20040 are separated by 44 nucleotidesAO356_20040 and AO356_20045 are separated by 135 nucleotidesAO356_20045 and AO356_20050 are separated by 2 nucleotidesAO356_20050 and AO356_20055 are separated by 193 nucleotides AO356_20035: AO356_20035 - cysteine protease, at 4,485,588 to 4,486,247 _20035 AO356_20040: AO356_20040 - glutathione S-transferase, at 4,486,292 to 4,486,915 _20040 AO356_20045: AO356_20045 - ABC transporter, at 4,487,051 to 4,487,983 _20045 AO356_20050: AO356_20050 - hypothetical protein, at 4,487,986 to 4,488,765 _20050 AO356_20055: AO356_20055 - ATP-binding protein, at 4,488,959 to 4,489,474 _20055 Position (kb) 4487 4488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4486.107 kb on + strand, within AO356_20035at 4486.107 kb on + strand, within AO356_20035at 4486.107 kb on + strand, within AO356_20035at 4486.107 kb on + strand, within AO356_20035at 4486.108 kb on - strand, within AO356_20035at 4486.108 kb on - strand, within AO356_20035at 4486.108 kb on - strand, within AO356_20035at 4486.255 kb on + strandat 4486.256 kb on - strandat 4486.272 kb on + strandat 4486.272 kb on + strandat 4486.272 kb on + strandat 4486.272 kb on + strandat 4486.273 kb on - strandat 4486.302 kb on + strandat 4486.303 kb on - strandat 4486.341 kb on + strandat 4486.341 kb on + strandat 4486.341 kb on + strandat 4486.342 kb on - strandat 4486.422 kb on - strand, within AO356_20040at 4486.555 kb on - strand, within AO356_20040at 4486.745 kb on + strand, within AO356_20040at 4486.745 kb on + strand, within AO356_20040at 4486.745 kb on + strand, within AO356_20040at 4486.745 kb on + strand, within AO356_20040at 4486.799 kb on + strand, within AO356_20040at 4486.799 kb on + strand, within AO356_20040at 4486.799 kb on + strand, within AO356_20040at 4486.799 kb on + strand, within AO356_20040at 4486.799 kb on + strand, within AO356_20040at 4486.800 kb on - strand, within AO356_20040at 4486.800 kb on - strand, within AO356_20040at 4486.845 kb on + strand, within AO356_20040at 4486.857 kb on - strandat 4486.913 kb on + strandat 4486.913 kb on + strandat 4486.913 kb on + strandat 4486.914 kb on - strandat 4486.914 kb on - strandat 4486.914 kb on - strandat 4486.916 kb on + strandat 4486.916 kb on + strandat 4486.916 kb on + strandat 4486.917 kb on - strandat 4486.917 kb on - strandat 4486.920 kb on + strandat 4486.920 kb on + strandat 4486.920 kb on + strandat 4486.920 kb on + strandat 4486.921 kb on - strandat 4486.921 kb on - strandat 4486.921 kb on - strandat 4486.923 kb on + strandat 4486.923 kb on + strandat 4486.923 kb on + strandat 4486.923 kb on + strandat 4486.941 kb on + strandat 4486.941 kb on + strandat 4486.942 kb on - strandat 4486.942 kb on - strandat 4486.942 kb on - strandat 4486.942 kb on - strandat 4487.008 kb on + strandat 4487.008 kb on + strandat 4487.008 kb on + strandat 4487.008 kb on + strandat 4487.012 kb on + strandat 4487.012 kb on + strandat 4487.012 kb on + strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.013 kb on - strandat 4487.050 kb on + strandat 4487.409 kb on - strand, within AO356_20045at 4487.409 kb on - strand, within AO356_20045at 4487.409 kb on - strand, within AO356_20045at 4487.633 kb on + strand, within AO356_20045at 4487.634 kb on - strand, within AO356_20045at 4487.634 kb on - strand, within AO356_20045at 4487.637 kb on + strand, within AO356_20045at 4487.637 kb on + strand, within AO356_20045at 4487.638 kb on - strand, within AO356_20045at 4487.638 kb on - strand, within AO356_20045at 4487.638 kb on - strand, within AO356_20045at 4487.979 kb on + strandat 4487.979 kb on + strandat 4488.024 kb on + strandat 4488.024 kb on + strandat 4488.106 kb on + strand, within AO356_20050at 4488.107 kb on - strand, within AO356_20050at 4488.107 kb on - strand, within AO356_20050at 4488.166 kb on + strand, within AO356_20050at 4488.166 kb on + strand, within AO356_20050at 4488.166 kb on + strand, within AO356_20050at 4488.167 kb on - strand, within AO356_20050at 4488.167 kb on - strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.175 kb on + strand, within AO356_20050at 4488.176 kb on - strand, within AO356_20050at 4488.176 kb on - strand, within AO356_20050at 4488.303 kb on + strand, within AO356_20050at 4488.304 kb on - strand, within AO356_20050at 4488.320 kb on - strand, within AO356_20050at 4488.541 kb on + strand, within AO356_20050at 4488.541 kb on + strand, within AO356_20050at 4488.541 kb on + strand, within AO356_20050at 4488.542 kb on - strand, within AO356_20050at 4488.542 kb on - strand, within AO356_20050at 4488.559 kb on + strand, within AO356_20050at 4488.560 kb on - strand, within AO356_20050at 4488.560 kb on - strand, within AO356_20050at 4488.596 kb on + strand, within AO356_20050at 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.716 kb on - strandat 4488.716 kb on - strandat 4488.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,486,107 + AO356_20035 0.79 +1.0
4,486,107 + AO356_20035 0.79 +0.1
4,486,107 + AO356_20035 0.79 -0.0
4,486,107 + AO356_20035 0.79 +0.4
4,486,108 - AO356_20035 0.79 +0.2
4,486,108 - AO356_20035 0.79 +0.2
4,486,108 - AO356_20035 0.79 -0.3
4,486,255 + +0.5
4,486,256 - +2.1
4,486,272 + -1.2
4,486,272 + +0.7
4,486,272 + +0.4
4,486,272 + +0.6
4,486,273 - -0.7
4,486,302 + -0.9
4,486,303 - +0.0
4,486,341 + -0.6
4,486,341 + +0.3
4,486,341 + -0.0
4,486,342 - +0.5
4,486,422 - AO356_20040 0.21 +0.9
4,486,555 - AO356_20040 0.42 +0.2
4,486,745 + AO356_20040 0.73 +0.5
4,486,745 + AO356_20040 0.73 +0.2
4,486,745 + AO356_20040 0.73 -0.2
4,486,745 + AO356_20040 0.73 -1.0
4,486,799 + AO356_20040 0.81 +0.5
4,486,799 + AO356_20040 0.81 +0.2
4,486,799 + AO356_20040 0.81 +0.1
4,486,799 + AO356_20040 0.81 -1.2
4,486,799 + AO356_20040 0.81 +0.3
4,486,800 - AO356_20040 0.81 -0.2
4,486,800 - AO356_20040 0.81 +0.4
4,486,845 + AO356_20040 0.89 -0.4
4,486,857 - +0.2
4,486,913 + +0.9
4,486,913 + -0.5
4,486,913 + +0.2
4,486,914 - -0.6
4,486,914 - +0.1
4,486,914 - -0.1
4,486,916 + -0.4
4,486,916 + +0.7
4,486,916 + +0.7
4,486,917 - +0.8
4,486,917 - +0.4
4,486,920 + -0.4
4,486,920 + -0.6
4,486,920 + -0.8
4,486,920 + +0.1
4,486,921 - +0.7
4,486,921 - -0.1
4,486,921 - +1.1
4,486,923 + +0.7
4,486,923 + -0.5
4,486,923 + +0.9
4,486,923 + +0.0
4,486,941 + +0.1
4,486,941 + -0.0
4,486,942 - +0.0
4,486,942 - +1.4
4,486,942 - -2.6
4,486,942 - +0.0
4,487,008 + -0.3
4,487,008 + +0.7
4,487,008 + +1.0
4,487,008 + +0.3
4,487,012 + +0.5
4,487,012 + +0.0
4,487,012 + +2.7
4,487,013 - +0.6
4,487,013 - +0.2
4,487,013 - -0.5
4,487,013 - +1.2
4,487,013 - -2.5
4,487,013 - +0.6
4,487,013 - -0.5
4,487,050 + +0.0
4,487,409 - AO356_20045 0.38 +0.5
4,487,409 - AO356_20045 0.38 +2.3
4,487,409 - AO356_20045 0.38 +0.7
4,487,633 + AO356_20045 0.62 +0.4
4,487,634 - AO356_20045 0.62 +1.4
4,487,634 - AO356_20045 0.62 +1.1
4,487,637 + AO356_20045 0.63 -0.0
4,487,637 + AO356_20045 0.63 -0.4
4,487,638 - AO356_20045 0.63 -0.1
4,487,638 - AO356_20045 0.63 +0.2
4,487,638 - AO356_20045 0.63 +0.5
4,487,979 + -1.3
4,487,979 + -0.1
4,488,024 + -0.4
4,488,024 + +0.3
4,488,106 + AO356_20050 0.15 +0.8
4,488,107 - AO356_20050 0.16 -0.8
4,488,107 - AO356_20050 0.16 -0.3
4,488,166 + AO356_20050 0.23 -0.6
4,488,166 + AO356_20050 0.23 +0.1
4,488,166 + AO356_20050 0.23 +1.6
4,488,167 - AO356_20050 0.23 -1.3
4,488,167 - AO356_20050 0.23 +0.1
4,488,175 + AO356_20050 0.24 -0.2
4,488,175 + AO356_20050 0.24 -0.1
4,488,175 + AO356_20050 0.24 +0.2
4,488,175 + AO356_20050 0.24 -0.3
4,488,175 + AO356_20050 0.24 -0.4
4,488,175 + AO356_20050 0.24 +0.5
4,488,175 + AO356_20050 0.24 -1.5
4,488,175 + AO356_20050 0.24 +0.2
4,488,176 - AO356_20050 0.24 +0.5
4,488,176 - AO356_20050 0.24 -0.3
4,488,303 + AO356_20050 0.41 -2.8
4,488,304 - AO356_20050 0.41 -0.2
4,488,320 - AO356_20050 0.43 -1.6
4,488,541 + AO356_20050 0.71 -0.3
4,488,541 + AO356_20050 0.71 -0.2
4,488,541 + AO356_20050 0.71 -0.5
4,488,542 - AO356_20050 0.71 -0.7
4,488,542 - AO356_20050 0.71 +1.2
4,488,559 + AO356_20050 0.73 -1.4
4,488,560 - AO356_20050 0.74 -1.1
4,488,560 - AO356_20050 0.74 +0.7
4,488,596 + AO356_20050 0.78 +1.1
4,488,715 + +2.0
4,488,715 + +0.7
4,488,715 + +0.3
4,488,715 + -0.4
4,488,715 + -0.4
4,488,716 - -0.6
4,488,716 - +0.7
4,488,716 - +0.6

Or see this region's nucleotide sequence