Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17395

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17390 and AO356_17395 are separated by 11 nucleotidesAO356_17395 and AO356_17400 are separated by 62 nucleotidesAO356_17400 and AO356_17405 overlap by 4 nucleotides AO356_17390: AO356_17390 - amino acid ABC transporter permease, at 3,919,035 to 3,920,132 _17390 AO356_17395: AO356_17395 - glutamine ABC transporter ATP-binding protein, at 3,920,144 to 3,920,908 _17395 AO356_17400: AO356_17400 - transcriptional regulator, at 3,920,971 to 3,921,453 _17400 AO356_17405: AO356_17405 - motility quorum-sensing regulator MqsR, at 3,921,450 to 3,921,761 _17405 Position (kb) 3920 3921Strain fitness (log2 ratio) -2 -1 0 1 2at 3919.158 kb on + strand, within AO356_17390at 3919.158 kb on + strand, within AO356_17390at 3919.158 kb on + strand, within AO356_17390at 3919.158 kb on + strand, within AO356_17390at 3919.158 kb on + strand, within AO356_17390at 3919.159 kb on - strand, within AO356_17390at 3919.167 kb on + strand, within AO356_17390at 3919.167 kb on + strand, within AO356_17390at 3919.167 kb on + strand, within AO356_17390at 3919.167 kb on + strand, within AO356_17390at 3919.167 kb on + strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.168 kb on - strand, within AO356_17390at 3919.178 kb on - strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.296 kb on + strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.297 kb on - strand, within AO356_17390at 3919.302 kb on + strand, within AO356_17390at 3919.302 kb on + strand, within AO356_17390at 3919.303 kb on - strand, within AO356_17390at 3919.306 kb on - strand, within AO356_17390at 3919.330 kb on + strand, within AO356_17390at 3919.404 kb on + strand, within AO356_17390at 3919.423 kb on + strand, within AO356_17390at 3919.423 kb on + strand, within AO356_17390at 3919.424 kb on - strand, within AO356_17390at 3919.424 kb on - strand, within AO356_17390at 3919.424 kb on - strand, within AO356_17390at 3919.428 kb on + strand, within AO356_17390at 3919.764 kb on + strand, within AO356_17390at 3919.764 kb on + strand, within AO356_17390at 3919.764 kb on + strand, within AO356_17390at 3919.764 kb on + strand, within AO356_17390at 3919.764 kb on + strand, within AO356_17390at 3919.765 kb on - strand, within AO356_17390at 3919.765 kb on - strand, within AO356_17390at 3919.816 kb on - strand, within AO356_17390at 3920.034 kb on + strandat 3920.034 kb on + strandat 3920.034 kb on + strandat 3920.034 kb on + strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.035 kb on - strandat 3920.075 kb on + strandat 3920.075 kb on + strandat 3920.075 kb on + strandat 3920.075 kb on + strandat 3920.075 kb on + strandat 3920.075 kb on + strandat 3920.130 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.138 kb on + strandat 3920.139 kb on - strandat 3920.139 kb on - strandat 3920.139 kb on - strandat 3920.143 kb on + strandat 3920.143 kb on + strandat 3920.144 kb on - strandat 3920.144 kb on - strandat 3920.144 kb on - strandat 3920.185 kb on + strandat 3920.269 kb on + strand, within AO356_17395at 3920.270 kb on - strand, within AO356_17395at 3920.270 kb on - strand, within AO356_17395at 3920.300 kb on - strand, within AO356_17395at 3920.540 kb on + strand, within AO356_17395at 3920.540 kb on + strand, within AO356_17395at 3920.541 kb on - strand, within AO356_17395at 3920.541 kb on - strand, within AO356_17395at 3920.541 kb on - strand, within AO356_17395at 3920.579 kb on + strand, within AO356_17395at 3920.580 kb on - strand, within AO356_17395at 3920.918 kb on - strandat 3920.918 kb on - strandat 3920.929 kb on + strandat 3920.930 kb on - strandat 3920.930 kb on - strandat 3920.952 kb on + strandat 3920.953 kb on - strandat 3921.122 kb on - strand, within AO356_17400at 3921.122 kb on - strand, within AO356_17400at 3921.122 kb on - strand, within AO356_17400at 3921.196 kb on + strand, within AO356_17400at 3921.196 kb on + strand, within AO356_17400at 3921.196 kb on + strand, within AO356_17400at 3921.502 kb on + strand, within AO356_17405at 3921.502 kb on + strand, within AO356_17405at 3921.502 kb on + strand, within AO356_17405at 3921.517 kb on + strand, within AO356_17405at 3921.517 kb on + strand, within AO356_17405at 3921.518 kb on - strand, within AO356_17405at 3921.518 kb on - strand, within AO356_17405at 3921.518 kb on - strand, within AO356_17405at 3921.577 kb on + strand, within AO356_17405at 3921.578 kb on - strand, within AO356_17405at 3921.578 kb on - strand, within AO356_17405at 3921.596 kb on - strand, within AO356_17405at 3921.596 kb on - strand, within AO356_17405at 3921.596 kb on - strand, within AO356_17405at 3921.596 kb on - strand, within AO356_17405at 3921.649 kb on - strand, within AO356_17405at 3921.761 kb on + strandat 3921.833 kb on - strandat 3921.848 kb on + strandat 3921.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,919,158 + AO356_17390 0.11 +0.1
3,919,158 + AO356_17390 0.11 -0.3
3,919,158 + AO356_17390 0.11 -0.6
3,919,158 + AO356_17390 0.11 -0.8
3,919,158 + AO356_17390 0.11 +0.6
3,919,159 - AO356_17390 0.11 -1.0
3,919,167 + AO356_17390 0.12 -0.6
3,919,167 + AO356_17390 0.12 +0.1
3,919,167 + AO356_17390 0.12 -1.2
3,919,167 + AO356_17390 0.12 -0.3
3,919,167 + AO356_17390 0.12 -1.3
3,919,168 - AO356_17390 0.12 -0.4
3,919,168 - AO356_17390 0.12 +0.7
3,919,168 - AO356_17390 0.12 -1.5
3,919,168 - AO356_17390 0.12 -0.3
3,919,168 - AO356_17390 0.12 -2.3
3,919,168 - AO356_17390 0.12 +0.4
3,919,178 - AO356_17390 0.13 +0.6
3,919,296 + AO356_17390 0.24 -1.4
3,919,296 + AO356_17390 0.24 +0.5
3,919,296 + AO356_17390 0.24 +0.2
3,919,296 + AO356_17390 0.24 -0.8
3,919,296 + AO356_17390 0.24 -0.1
3,919,296 + AO356_17390 0.24 +0.6
3,919,296 + AO356_17390 0.24 -1.1
3,919,297 - AO356_17390 0.24 +0.3
3,919,297 - AO356_17390 0.24 -0.8
3,919,297 - AO356_17390 0.24 +2.2
3,919,297 - AO356_17390 0.24 -0.1
3,919,297 - AO356_17390 0.24 +0.5
3,919,297 - AO356_17390 0.24 -1.9
3,919,297 - AO356_17390 0.24 +0.4
3,919,297 - AO356_17390 0.24 -0.7
3,919,302 + AO356_17390 0.24 -0.3
3,919,302 + AO356_17390 0.24 +0.5
3,919,303 - AO356_17390 0.24 -0.6
3,919,306 - AO356_17390 0.25 +0.9
3,919,330 + AO356_17390 0.27 -0.3
3,919,404 + AO356_17390 0.34 +0.2
3,919,423 + AO356_17390 0.35 -0.2
3,919,423 + AO356_17390 0.35 +1.2
3,919,424 - AO356_17390 0.35 -0.7
3,919,424 - AO356_17390 0.35 -0.5
3,919,424 - AO356_17390 0.35 +0.7
3,919,428 + AO356_17390 0.36 -0.9
3,919,764 + AO356_17390 0.66 -0.7
3,919,764 + AO356_17390 0.66 +0.7
3,919,764 + AO356_17390 0.66 +0.3
3,919,764 + AO356_17390 0.66 -0.1
3,919,764 + AO356_17390 0.66 +1.2
3,919,765 - AO356_17390 0.66 +0.3
3,919,765 - AO356_17390 0.66 -0.4
3,919,816 - AO356_17390 0.71 +0.5
3,920,034 + +0.4
3,920,034 + +0.7
3,920,034 + -0.2
3,920,034 + +0.5
3,920,035 - -0.8
3,920,035 - +0.2
3,920,035 - +0.1
3,920,035 - -0.3
3,920,035 - -0.1
3,920,035 - -0.0
3,920,035 - +0.9
3,920,035 - +0.6
3,920,075 + +0.6
3,920,075 + +0.5
3,920,075 + -0.4
3,920,075 + -1.4
3,920,075 + -0.1
3,920,075 + +0.1
3,920,130 + -0.4
3,920,138 + +0.7
3,920,138 + -1.0
3,920,138 + -0.8
3,920,138 + -0.5
3,920,138 + +0.0
3,920,138 + +0.9
3,920,138 + -0.2
3,920,139 - -0.0
3,920,139 - +0.3
3,920,139 - +0.7
3,920,143 + +0.5
3,920,143 + -0.6
3,920,144 - -0.4
3,920,144 - -0.9
3,920,144 - -0.3
3,920,185 + +0.6
3,920,269 + AO356_17395 0.16 +0.8
3,920,270 - AO356_17395 0.16 +0.2
3,920,270 - AO356_17395 0.16 +0.3
3,920,300 - AO356_17395 0.20 +0.3
3,920,540 + AO356_17395 0.52 +0.5
3,920,540 + AO356_17395 0.52 -0.2
3,920,541 - AO356_17395 0.52 +1.3
3,920,541 - AO356_17395 0.52 +1.0
3,920,541 - AO356_17395 0.52 +0.6
3,920,579 + AO356_17395 0.57 -0.5
3,920,580 - AO356_17395 0.57 +0.9
3,920,918 - +0.9
3,920,918 - +0.1
3,920,929 + +0.8
3,920,930 - -0.9
3,920,930 - +0.5
3,920,952 + +0.2
3,920,953 - -1.2
3,921,122 - AO356_17400 0.31 -0.0
3,921,122 - AO356_17400 0.31 -0.5
3,921,122 - AO356_17400 0.31 +1.8
3,921,196 + AO356_17400 0.47 +0.5
3,921,196 + AO356_17400 0.47 -1.9
3,921,196 + AO356_17400 0.47 -0.4
3,921,502 + AO356_17405 0.17 +0.1
3,921,502 + AO356_17405 0.17 -0.0
3,921,502 + AO356_17405 0.17 -0.4
3,921,517 + AO356_17405 0.21 +0.4
3,921,517 + AO356_17405 0.21 +0.9
3,921,518 - AO356_17405 0.22 -0.1
3,921,518 - AO356_17405 0.22 +0.9
3,921,518 - AO356_17405 0.22 -0.7
3,921,577 + AO356_17405 0.41 +0.1
3,921,578 - AO356_17405 0.41 +0.3
3,921,578 - AO356_17405 0.41 +1.3
3,921,596 - AO356_17405 0.47 +0.9
3,921,596 - AO356_17405 0.47 -0.2
3,921,596 - AO356_17405 0.47 +0.6
3,921,596 - AO356_17405 0.47 +0.0
3,921,649 - AO356_17405 0.64 +0.1
3,921,761 + +0.3
3,921,833 - -0.8
3,921,848 + +0.4
3,921,901 - -0.8

Or see this region's nucleotide sequence