Experiment: KB with capsaicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2614 and Psyr_2615 overlap by 4 nucleotides Psyr_2615 and Psyr_2616 are separated by 425 nucleotides
Psyr_2614: Psyr_2614 - Amino acid adenylation, at 3,098,777 to 3,114,895
_2614
Psyr_2615: Psyr_2615 - Amino acid adenylation, at 3,114,892 to 3,131,301
_2615
Psyr_2616: Psyr_2616 - Amino acid adenylation, at 3,131,727 to 3,172,340
_2616
Position (kb) 3114
3115
3116
3117
3118
3119
3120
3121
3122
3123
3124
3125
3126
3127
3128
3129
3130
3131
3132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3114.026 kb on + strand at 3114.105 kb on - strand at 3114.232 kb on + strand at 3114.461 kb on + strand at 3114.462 kb on - strand at 3114.462 kb on - strand at 3114.464 kb on + strand at 3114.465 kb on - strand at 3114.465 kb on - strand at 3114.539 kb on + strand at 3114.539 kb on + strand at 3114.539 kb on + strand at 3114.539 kb on + strand at 3114.540 kb on - strand at 3114.540 kb on - strand at 3114.540 kb on - strand at 3114.541 kb on + strand at 3114.542 kb on - strand at 3114.557 kb on + strand at 3114.682 kb on - strand at 3114.858 kb on - strand at 3115.063 kb on + strand at 3115.066 kb on + strand at 3115.067 kb on - strand at 3115.228 kb on + strand at 3115.229 kb on - strand at 3115.229 kb on - strand at 3115.294 kb on + strand at 3115.298 kb on + strand at 3115.298 kb on + strand at 3115.732 kb on + strand at 3115.732 kb on + strand at 3115.732 kb on + strand at 3115.732 kb on + strand at 3116.031 kb on + strand at 3116.032 kb on - strand at 3116.074 kb on - strand at 3116.313 kb on - strand at 3116.663 kb on - strand, within Psyr_2615 at 3116.809 kb on + strand, within Psyr_2615 at 3116.810 kb on - strand, within Psyr_2615 at 3117.016 kb on + strand, within Psyr_2615 at 3117.025 kb on + strand, within Psyr_2615 at 3117.026 kb on - strand, within Psyr_2615 at 3117.422 kb on - strand, within Psyr_2615 at 3117.445 kb on + strand, within Psyr_2615 at 3117.524 kb on - strand, within Psyr_2615 at 3117.706 kb on + strand, within Psyr_2615 at 3117.880 kb on + strand, within Psyr_2615 at 3117.883 kb on + strand, within Psyr_2615 at 3117.958 kb on + strand, within Psyr_2615 at 3117.976 kb on + strand, within Psyr_2615 at 3118.241 kb on + strand, within Psyr_2615 at 3118.242 kb on - strand, within Psyr_2615 at 3118.462 kb on + strand, within Psyr_2615 at 3118.495 kb on + strand, within Psyr_2615 at 3118.529 kb on - strand, within Psyr_2615 at 3118.532 kb on + strand, within Psyr_2615 at 3118.728 kb on + strand, within Psyr_2615 at 3118.729 kb on - strand, within Psyr_2615 at 3118.729 kb on - strand, within Psyr_2615 at 3118.730 kb on + strand, within Psyr_2615 at 3118.731 kb on - strand, within Psyr_2615 at 3118.808 kb on + strand, within Psyr_2615 at 3118.808 kb on + strand, within Psyr_2615 at 3118.809 kb on - strand, within Psyr_2615 at 3118.809 kb on - strand, within Psyr_2615 at 3118.812 kb on + strand, within Psyr_2615 at 3118.813 kb on - strand, within Psyr_2615 at 3118.966 kb on + strand, within Psyr_2615 at 3118.967 kb on - strand, within Psyr_2615 at 3119.075 kb on + strand, within Psyr_2615 at 3119.076 kb on - strand, within Psyr_2615 at 3119.076 kb on - strand, within Psyr_2615 at 3119.314 kb on - strand, within Psyr_2615 at 3120.075 kb on - strand, within Psyr_2615 at 3120.088 kb on + strand, within Psyr_2615 at 3120.088 kb on + strand, within Psyr_2615 at 3120.089 kb on - strand, within Psyr_2615 at 3120.089 kb on - strand, within Psyr_2615 at 3120.090 kb on + strand, within Psyr_2615 at 3120.090 kb on + strand, within Psyr_2615 at 3120.090 kb on + strand, within Psyr_2615 at 3120.090 kb on + strand, within Psyr_2615 at 3120.091 kb on - strand, within Psyr_2615 at 3120.091 kb on - strand, within Psyr_2615 at 3120.091 kb on - strand, within Psyr_2615 at 3120.263 kb on - strand, within Psyr_2615 at 3120.682 kb on + strand, within Psyr_2615 at 3120.761 kb on - strand, within Psyr_2615 at 3121.195 kb on + strand, within Psyr_2615 at 3121.196 kb on - strand, within Psyr_2615 at 3121.196 kb on - strand, within Psyr_2615 at 3121.196 kb on - strand, within Psyr_2615 at 3121.582 kb on + strand, within Psyr_2615 at 3121.582 kb on + strand, within Psyr_2615 at 3121.583 kb on - strand, within Psyr_2615 at 3121.717 kb on + strand, within Psyr_2615 at 3122.188 kb on + strand, within Psyr_2615 at 3122.188 kb on + strand, within Psyr_2615 at 3122.188 kb on + strand, within Psyr_2615 at 3122.189 kb on - strand, within Psyr_2615 at 3122.189 kb on - strand, within Psyr_2615 at 3122.189 kb on - strand, within Psyr_2615 at 3122.841 kb on + strand, within Psyr_2615 at 3122.842 kb on - strand, within Psyr_2615 at 3122.865 kb on - strand, within Psyr_2615 at 3122.865 kb on - strand, within Psyr_2615 at 3122.865 kb on - strand, within Psyr_2615 at 3122.887 kb on + strand, within Psyr_2615 at 3122.887 kb on + strand, within Psyr_2615 at 3122.888 kb on - strand, within Psyr_2615 at 3122.888 kb on - strand, within Psyr_2615 at 3122.991 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.266 kb on - strand, within Psyr_2615 at 3123.269 kb on + strand, within Psyr_2615 at 3123.269 kb on + strand, within Psyr_2615 at 3123.270 kb on - strand, within Psyr_2615 at 3123.460 kb on + strand, within Psyr_2615 at 3123.461 kb on - strand, within Psyr_2615 at 3123.461 kb on - strand, within Psyr_2615 at 3123.469 kb on + strand, within Psyr_2615 at 3123.469 kb on + strand, within Psyr_2615 at 3123.469 kb on + strand, within Psyr_2615 at 3123.469 kb on + strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.470 kb on - strand, within Psyr_2615 at 3123.988 kb on + strand, within Psyr_2615 at 3123.988 kb on + strand, within Psyr_2615 at 3123.989 kb on - strand, within Psyr_2615 at 3123.989 kb on - strand, within Psyr_2615 at 3124.042 kb on + strand, within Psyr_2615 at 3124.042 kb on + strand, within Psyr_2615 at 3124.042 kb on + strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.043 kb on - strand, within Psyr_2615 at 3124.073 kb on - strand, within Psyr_2615 at 3124.148 kb on - strand, within Psyr_2615 at 3124.345 kb on + strand, within Psyr_2615 at 3124.345 kb on + strand, within Psyr_2615 at 3124.345 kb on + strand, within Psyr_2615 at 3124.345 kb on + strand, within Psyr_2615 at 3124.346 kb on - strand, within Psyr_2615 at 3124.424 kb on - strand, within Psyr_2615 at 3124.537 kb on + strand, within Psyr_2615 at 3124.538 kb on - strand, within Psyr_2615 at 3124.677 kb on + strand, within Psyr_2615 at 3124.678 kb on - strand, within Psyr_2615 at 3125.416 kb on + strand, within Psyr_2615 at 3125.416 kb on + strand, within Psyr_2615 at 3125.416 kb on + strand, within Psyr_2615 at 3125.462 kb on + strand, within Psyr_2615 at 3125.687 kb on + strand, within Psyr_2615 at 3125.758 kb on - strand, within Psyr_2615 at 3126.112 kb on + strand, within Psyr_2615 at 3126.113 kb on - strand, within Psyr_2615 at 3126.113 kb on - strand, within Psyr_2615 at 3126.115 kb on - strand, within Psyr_2615 at 3126.533 kb on - strand, within Psyr_2615 at 3126.619 kb on + strand, within Psyr_2615 at 3126.620 kb on - strand, within Psyr_2615 at 3126.694 kb on + strand, within Psyr_2615 at 3126.703 kb on + strand, within Psyr_2615 at 3127.117 kb on - strand, within Psyr_2615 at 3127.127 kb on + strand, within Psyr_2615 at 3127.136 kb on - strand, within Psyr_2615 at 3127.136 kb on - strand, within Psyr_2615 at 3127.136 kb on - strand, within Psyr_2615 at 3127.169 kb on - strand, within Psyr_2615 at 3127.169 kb on - strand, within Psyr_2615 at 3127.300 kb on + strand, within Psyr_2615 at 3127.384 kb on - strand, within Psyr_2615 at 3127.453 kb on + strand, within Psyr_2615 at 3127.603 kb on + strand, within Psyr_2615 at 3127.603 kb on + strand, within Psyr_2615 at 3127.604 kb on - strand, within Psyr_2615 at 3127.604 kb on - strand, within Psyr_2615 at 3127.604 kb on - strand, within Psyr_2615 at 3127.604 kb on - strand, within Psyr_2615 at 3127.682 kb on - strand, within Psyr_2615 at 3127.700 kb on - strand, within Psyr_2615 at 3128.118 kb on - strand, within Psyr_2615 at 3129.187 kb on - strand, within Psyr_2615 at 3129.371 kb on - strand, within Psyr_2615 at 3129.371 kb on - strand, within Psyr_2615 at 3129.753 kb on - strand at 3129.967 kb on + strand at 3129.968 kb on - strand at 3130.388 kb on - strand at 3130.388 kb on - strand at 3130.388 kb on - strand at 3130.519 kb on + strand at 3130.519 kb on + strand at 3130.520 kb on - strand at 3130.538 kb on + strand at 3130.625 kb on - strand at 3130.900 kb on + strand at 3130.901 kb on - strand at 3130.901 kb on - strand at 3130.918 kb on + strand at 3130.919 kb on - strand at 3130.919 kb on - strand at 3130.919 kb on - strand at 3130.921 kb on - strand at 3132.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.125 mg/ml remove 3,114,026 + +0.2 3,114,105 - +0.0 3,114,232 + +0.2 3,114,461 + +0.2 3,114,462 - -0.4 3,114,462 - +0.0 3,114,464 + -1.3 3,114,465 - +1.2 3,114,465 - -0.3 3,114,539 + +0.3 3,114,539 + +2.0 3,114,539 + +0.8 3,114,539 + +0.4 3,114,540 - +2.1 3,114,540 - -0.3 3,114,540 - -0.2 3,114,541 + +0.5 3,114,542 - +0.4 3,114,557 + -0.1 3,114,682 - +0.5 3,114,858 - -1.2 3,115,063 + +0.5 3,115,066 + +0.3 3,115,067 - +0.7 3,115,228 + +0.4 3,115,229 - -0.5 3,115,229 - -0.7 3,115,294 + -0.1 3,115,298 + +0.2 3,115,298 + +0.0 3,115,732 + +0.2 3,115,732 + -0.2 3,115,732 + -2.7 3,115,732 + +1.2 3,116,031 + +0.8 3,116,032 - +0.3 3,116,074 - -0.9 3,116,313 - +0.8 3,116,663 - Psyr_2615 0.11 -0.5 3,116,809 + Psyr_2615 0.12 -1.6 3,116,810 - Psyr_2615 0.12 -0.0 3,117,016 + Psyr_2615 0.13 -0.8 3,117,025 + Psyr_2615 0.13 +0.7 3,117,026 - Psyr_2615 0.13 +0.4 3,117,422 - Psyr_2615 0.15 -0.7 3,117,445 + Psyr_2615 0.16 +1.1 3,117,524 - Psyr_2615 0.16 -0.3 3,117,706 + Psyr_2615 0.17 -0.1 3,117,880 + Psyr_2615 0.18 +0.7 3,117,883 + Psyr_2615 0.18 -0.1 3,117,958 + Psyr_2615 0.19 -0.2 3,117,976 + Psyr_2615 0.19 +1.0 3,118,241 + Psyr_2615 0.20 -0.0 3,118,242 - Psyr_2615 0.20 +0.4 3,118,462 + Psyr_2615 0.22 -1.3 3,118,495 + Psyr_2615 0.22 -0.4 3,118,529 - Psyr_2615 0.22 +0.8 3,118,532 + Psyr_2615 0.22 -0.1 3,118,728 + Psyr_2615 0.23 -0.3 3,118,729 - Psyr_2615 0.23 +0.1 3,118,729 - Psyr_2615 0.23 +1.3 3,118,730 + Psyr_2615 0.23 +1.3 3,118,731 - Psyr_2615 0.23 +0.4 3,118,808 + Psyr_2615 0.24 +0.8 3,118,808 + Psyr_2615 0.24 +0.4 3,118,809 - Psyr_2615 0.24 +1.5 3,118,809 - Psyr_2615 0.24 +1.6 3,118,812 + Psyr_2615 0.24 -1.7 3,118,813 - Psyr_2615 0.24 +0.2 3,118,966 + Psyr_2615 0.25 +1.3 3,118,967 - Psyr_2615 0.25 +0.7 3,119,075 + Psyr_2615 0.25 -0.0 3,119,076 - Psyr_2615 0.25 -1.7 3,119,076 - Psyr_2615 0.25 +0.2 3,119,314 - Psyr_2615 0.27 -1.3 3,120,075 - Psyr_2615 0.32 -0.1 3,120,088 + Psyr_2615 0.32 -0.3 3,120,088 + Psyr_2615 0.32 -0.7 3,120,089 - Psyr_2615 0.32 -0.4 3,120,089 - Psyr_2615 0.32 -2.9 3,120,090 + Psyr_2615 0.32 +0.3 3,120,090 + Psyr_2615 0.32 +0.9 3,120,090 + Psyr_2615 0.32 +1.5 3,120,090 + Psyr_2615 0.32 -1.0 3,120,091 - Psyr_2615 0.32 -0.3 3,120,091 - Psyr_2615 0.32 -0.7 3,120,091 - Psyr_2615 0.32 -0.8 3,120,263 - Psyr_2615 0.33 -0.5 3,120,682 + Psyr_2615 0.35 -0.2 3,120,761 - Psyr_2615 0.36 -0.1 3,121,195 + Psyr_2615 0.38 -1.7 3,121,196 - Psyr_2615 0.38 -0.1 3,121,196 - Psyr_2615 0.38 +0.0 3,121,196 - Psyr_2615 0.38 +0.4 3,121,582 + Psyr_2615 0.41 -0.6 3,121,582 + Psyr_2615 0.41 +2.0 3,121,583 - Psyr_2615 0.41 +1.3 3,121,717 + Psyr_2615 0.42 -2.5 3,122,188 + Psyr_2615 0.44 +0.7 3,122,188 + Psyr_2615 0.44 -0.1 3,122,188 + Psyr_2615 0.44 -0.0 3,122,189 - Psyr_2615 0.44 +3.5 3,122,189 - Psyr_2615 0.44 +2.7 3,122,189 - Psyr_2615 0.44 +1.1 3,122,841 + Psyr_2615 0.48 +0.2 3,122,842 - Psyr_2615 0.48 -0.1 3,122,865 - Psyr_2615 0.49 -0.5 3,122,865 - Psyr_2615 0.49 +0.3 3,122,865 - Psyr_2615 0.49 +0.2 3,122,887 + Psyr_2615 0.49 +0.3 3,122,887 + Psyr_2615 0.49 +0.0 3,122,888 - Psyr_2615 0.49 +0.2 3,122,888 - Psyr_2615 0.49 +1.2 3,122,991 - Psyr_2615 0.49 -0.9 3,123,266 - Psyr_2615 0.51 -0.8 3,123,266 - Psyr_2615 0.51 -0.3 3,123,266 - Psyr_2615 0.51 +1.3 3,123,266 - Psyr_2615 0.51 -0.8 3,123,266 - Psyr_2615 0.51 +0.1 3,123,266 - Psyr_2615 0.51 -0.5 3,123,266 - Psyr_2615 0.51 -1.7 3,123,269 + Psyr_2615 0.51 +0.8 3,123,269 + Psyr_2615 0.51 -0.3 3,123,270 - Psyr_2615 0.51 -0.5 3,123,460 + Psyr_2615 0.52 +1.1 3,123,461 - Psyr_2615 0.52 +0.7 3,123,461 - Psyr_2615 0.52 +0.1 3,123,469 + Psyr_2615 0.52 -0.1 3,123,469 + Psyr_2615 0.52 -0.0 3,123,469 + Psyr_2615 0.52 +2.0 3,123,469 + Psyr_2615 0.52 +0.2 3,123,470 - Psyr_2615 0.52 -1.3 3,123,470 - Psyr_2615 0.52 -2.3 3,123,470 - Psyr_2615 0.52 +0.1 3,123,470 - Psyr_2615 0.52 +0.3 3,123,470 - Psyr_2615 0.52 -0.3 3,123,470 - Psyr_2615 0.52 -0.7 3,123,988 + Psyr_2615 0.55 +1.2 3,123,988 + Psyr_2615 0.55 +0.8 3,123,989 - Psyr_2615 0.55 +0.4 3,123,989 - Psyr_2615 0.55 +1.0 3,124,042 + Psyr_2615 0.56 -1.0 3,124,042 + Psyr_2615 0.56 +0.3 3,124,042 + Psyr_2615 0.56 +0.9 3,124,043 - Psyr_2615 0.56 -0.0 3,124,043 - Psyr_2615 0.56 +1.3 3,124,043 - Psyr_2615 0.56 +0.2 3,124,043 - Psyr_2615 0.56 -0.5 3,124,043 - Psyr_2615 0.56 -0.1 3,124,043 - Psyr_2615 0.56 +1.3 3,124,073 - Psyr_2615 0.56 +0.5 3,124,148 - Psyr_2615 0.56 +0.5 3,124,345 + Psyr_2615 0.58 -0.4 3,124,345 + Psyr_2615 0.58 +1.1 3,124,345 + Psyr_2615 0.58 -1.1 3,124,345 + Psyr_2615 0.58 +1.5 3,124,346 - Psyr_2615 0.58 +0.3 3,124,424 - Psyr_2615 0.58 +0.7 3,124,537 + Psyr_2615 0.59 +0.1 3,124,538 - Psyr_2615 0.59 +0.3 3,124,677 + Psyr_2615 0.60 -1.5 3,124,678 - Psyr_2615 0.60 +0.2 3,125,416 + Psyr_2615 0.64 -1.0 3,125,416 + Psyr_2615 0.64 -1.1 3,125,416 + Psyr_2615 0.64 -0.7 3,125,462 + Psyr_2615 0.64 -1.1 3,125,687 + Psyr_2615 0.66 +0.7 3,125,758 - Psyr_2615 0.66 +0.3 3,126,112 + Psyr_2615 0.68 +0.8 3,126,113 - Psyr_2615 0.68 +0.1 3,126,113 - Psyr_2615 0.68 +0.7 3,126,115 - Psyr_2615 0.68 +0.9 3,126,533 - Psyr_2615 0.71 -0.1 3,126,619 + Psyr_2615 0.71 +0.6 3,126,620 - Psyr_2615 0.71 +0.2 3,126,694 + Psyr_2615 0.72 +0.4 3,126,703 + Psyr_2615 0.72 -0.1 3,127,117 - Psyr_2615 0.74 +3.1 3,127,127 + Psyr_2615 0.75 +0.2 3,127,136 - Psyr_2615 0.75 -0.4 3,127,136 - Psyr_2615 0.75 +0.3 3,127,136 - Psyr_2615 0.75 +2.0 3,127,169 - Psyr_2615 0.75 -0.1 3,127,169 - Psyr_2615 0.75 +0.4 3,127,300 + Psyr_2615 0.76 -0.7 3,127,384 - Psyr_2615 0.76 -1.4 3,127,453 + Psyr_2615 0.77 +1.5 3,127,603 + Psyr_2615 0.77 +0.7 3,127,603 + Psyr_2615 0.77 +0.2 3,127,604 - Psyr_2615 0.77 -0.2 3,127,604 - Psyr_2615 0.77 -0.3 3,127,604 - Psyr_2615 0.77 -0.7 3,127,604 - Psyr_2615 0.77 +0.3 3,127,682 - Psyr_2615 0.78 -2.0 3,127,700 - Psyr_2615 0.78 -0.1 3,128,118 - Psyr_2615 0.81 -0.9 3,129,187 - Psyr_2615 0.87 -0.4 3,129,371 - Psyr_2615 0.88 -0.7 3,129,371 - Psyr_2615 0.88 +0.5 3,129,753 - -0.2 3,129,967 + +0.5 3,129,968 - +0.1 3,130,388 - -0.9 3,130,388 - -0.1 3,130,388 - -0.9 3,130,519 + +1.0 3,130,519 + +0.1 3,130,520 - +0.2 3,130,538 + +0.9 3,130,625 - -0.5 3,130,900 + -1.6 3,130,901 - -1.1 3,130,901 - -1.2 3,130,918 + +1.0 3,130,919 - -2.0 3,130,919 - +0.1 3,130,919 - +0.2 3,130,921 - +0.7 3,132,022 - -0.7
Or see this region's nucleotide sequence