Strain Fitness in Pseudomonas putida KT2440 around PP_5192

Experiment: Formaldehyde 0.03125 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formaldehyde 0.03125 vol%
5,920,723	-		PP_5190	0.78	+0.8
5,920,911	-		PP_5190	0.89	+0.6
5,921,103	+				-0.6
5,921,245	+		PP_5191	0.22	+0.1
5,921,278	+		PP_5191	0.32	+0.7
5,921,295	-		PP_5191	0.37	+1.0
5,921,322	+		PP_5191	0.46	-0.1
5,921,525	+				+0.9
5,921,565	-				+1.4
5,921,610	-				-1.3
5,921,621	-				-0.5
5,921,642	+				+0.7
5,921,643	-				+0.2
5,921,643	-				-0.8
5,921,643	-				-1.2
5,921,643	-				+1.1
5,921,692	-				-1.3
5,921,693	+				-1.3
5,921,693	+				+1.5
5,921,694	-				-0.3
5,921,694	-				-0.1
5,921,694	-				+0.4
5,921,730	+				+0.4
5,921,731	-				+0.2
5,921,782	+				-0.6
5,921,782	+				+0.7
5,921,782	+				-0.1
5,921,782	+				-1.5
5,921,783	-				+0.5
5,921,783	-				-0.6
5,921,783	-				+0.1
5,921,918	+		PP_5192	0.13	+0.1
5,921,918	+		PP_5192	0.13	+0.9
5,921,918	+		PP_5192	0.13	-0.4
5,921,919	-		PP_5192	0.13	-1.2
5,922,026	+		PP_5192	0.16	+0.3
5,922,066	-		PP_5192	0.18	+0.5
5,922,066	-		PP_5192	0.18	-1.8
5,922,066	-		PP_5192	0.18	+0.2
5,922,128	+		PP_5192	0.20	+0.9
5,922,129	-		PP_5192	0.20	+0.5
5,922,398	+		PP_5192	0.29	-0.9
5,922,398	+		PP_5192	0.29	-0.1
5,922,414	-		PP_5192	0.30	-0.8
5,922,443	-		PP_5192	0.31	+0.0
5,922,455	+		PP_5192	0.31	+0.2
5,922,477	-		PP_5192	0.32	-1.1
5,922,477	-		PP_5192	0.32	-0.2
5,922,480	+		PP_5192	0.32	+0.2
5,922,481	-		PP_5192	0.32	+0.7
5,922,481	-		PP_5192	0.32	+0.5
5,922,481	-		PP_5192	0.32	+0.2
5,922,705	-		PP_5192	0.40	-2.8
5,922,913	+		PP_5192	0.47	-0.5
5,922,913	+		PP_5192	0.47	+0.9
5,922,914	-		PP_5192	0.47	-0.1
5,922,949	+		PP_5192	0.48	+0.7
5,922,950	-		PP_5192	0.48	+1.3
5,923,388	+		PP_5192	0.64	-0.4
5,923,389	-		PP_5192	0.64	+2.1
5,923,389	-		PP_5192	0.64	-3.2
5,923,458	+		PP_5192	0.66	+0.8
5,923,458	+		PP_5192	0.66	+0.2
5,923,458	+		PP_5192	0.66	-0.1
5,923,459	-		PP_5192	0.66	+0.4
5,923,520	-		PP_5192	0.68	-0.7
5,923,554	-		PP_5192	0.69	+0.0
5,923,554	-		PP_5192	0.69	+0.7
5,923,815	+		PP_5192	0.79	-0.0
5,924,082	-		PP_5192	0.88	+0.2
5,924,090	+		PP_5192	0.88	+0.3
5,924,090	+		PP_5192	0.88	-1.1
5,924,090	+		PP_5192	0.88	-0.7
5,924,090	+		PP_5192	0.88	-0.4
5,924,099	+		PP_5192	0.88	+1.6
5,924,205	-				-0.2
5,924,447	+				-0.2
5,924,447	+				+1.6
5,924,470	-				+1.2
5,924,470	-				-0.4
5,924,477	+				-0.2
5,924,477	+				+0.2
5,924,478	-				-0.2
5,924,478	-				+0.2
5,924,548	+				-0.4
5,924,582	+				-1.0
5,924,582	+				+0.2
5,924,583	-				-1.9
5,924,590	+				-1.0
5,924,628	+				+0.1
5,924,629	-				-0.8
5,924,722	-		PP_5193	0.25	+0.2
5,924,722	-		PP_5193	0.25	+0.5
5,924,799	+		PP_5193	0.45	-0.9
5,924,799	+		PP_5193	0.45	+0.0
5,924,799	+		PP_5193	0.45	+0.1
5,924,799	+		PP_5193	0.45	+1.0
5,924,799	+		PP_5193	0.45	+0.8
5,924,799	+		PP_5193	0.45	+0.1
5,924,799	+		PP_5193	0.45	-0.1
5,924,799	+		PP_5193	0.45	-0.7
5,924,799	+		PP_5193	0.45	-1.3
5,924,799	-		PP_5193	0.45	-0.2
5,924,800	-		PP_5193	0.45	-1.0
5,924,800	-		PP_5193	0.45	-1.7
5,924,800	-				+3.8
5,924,800	-		PP_5193	0.45	-0.3
5,924,800	-		PP_5193	0.45	+1.2
5,924,800	-		PP_5193	0.45	-0.4
5,924,800	-		PP_5193	0.45	-2.2
5,924,800	-		PP_5193	0.45	+0.8
5,924,888	+		PP_5193	0.68	-0.8
5,925,053	-				+0.3
5,925,054	+				+0.2
5,925,055	-				-0.3
5,925,055	-				+0.7
5,925,164	-				+1.3
5,925,211	+		PP_5194	0.14	+0.5
5,925,212	-		PP_5194	0.14	-0.2
5,925,273	-		PP_5194	0.19	+0.7