Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04755

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04750 and MMJJ_RS04755 are separated by 59 nucleotidesMMJJ_RS04755 and MMJJ_RS04760 are separated by 28 nucleotides MMJJ_RS04750: MMJJ_RS04750 - 5,10-methenyltetrahydromethanopterin hydrogenase, at 890,930 to 891,994 _RS04750 MMJJ_RS04755: MMJJ_RS04755 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB, at 892,054 to 893,079 _RS04755 MMJJ_RS04760: MMJJ_RS04760 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 893,108 to 894,640 _RS04760 Position (kb) 892 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 891.087 kb on - strand, within MMJJ_RS04750at 891.087 kb on - strand, within MMJJ_RS04750at 891.087 kb on - strand, within MMJJ_RS04750at 891.087 kb on - strand, within MMJJ_RS04750at 891.088 kb on + strand, within MMJJ_RS04750at 891.100 kb on - strand, within MMJJ_RS04750at 891.151 kb on + strand, within MMJJ_RS04750at 891.153 kb on - strand, within MMJJ_RS04750at 891.154 kb on + strand, within MMJJ_RS04750at 891.182 kb on + strand, within MMJJ_RS04750at 891.196 kb on + strand, within MMJJ_RS04750at 891.241 kb on + strand, within MMJJ_RS04750at 891.253 kb on - strand, within MMJJ_RS04750at 891.295 kb on + strand, within MMJJ_RS04750at 891.295 kb on + strand, within MMJJ_RS04750at 891.364 kb on + strand, within MMJJ_RS04750at 891.367 kb on - strand, within MMJJ_RS04750at 891.367 kb on - strand, within MMJJ_RS04750at 891.368 kb on + strand, within MMJJ_RS04750at 891.368 kb on + strand, within MMJJ_RS04750at 891.402 kb on - strand, within MMJJ_RS04750at 891.445 kb on + strand, within MMJJ_RS04750at 891.458 kb on + strand, within MMJJ_RS04750at 891.514 kb on + strand, within MMJJ_RS04750at 891.527 kb on - strand, within MMJJ_RS04750at 891.583 kb on + strand, within MMJJ_RS04750at 891.611 kb on - strand, within MMJJ_RS04750at 891.611 kb on - strand, within MMJJ_RS04750at 891.616 kb on - strand, within MMJJ_RS04750at 891.663 kb on - strand, within MMJJ_RS04750at 891.697 kb on - strand, within MMJJ_RS04750at 891.754 kb on + strand, within MMJJ_RS04750at 891.862 kb on - strand, within MMJJ_RS04750at 891.913 kb on - strandat 891.914 kb on + strandat 891.914 kb on + strandat 891.992 kb on - strandat 891.997 kb on + strandat 891.997 kb on + strandat 892.000 kb on + strandat 892.002 kb on - strandat 892.003 kb on + strandat 892.009 kb on - strandat 892.010 kb on + strandat 892.038 kb on + strandat 892.059 kb on + strandat 892.070 kb on - strandat 892.107 kb on + strandat 892.112 kb on - strandat 892.112 kb on - strandat 892.125 kb on + strandat 892.152 kb on + strandat 892.155 kb on - strandat 892.156 kb on + strandat 892.181 kb on - strand, within MMJJ_RS04755at 892.182 kb on + strand, within MMJJ_RS04755at 892.210 kb on + strandat 892.210 kb on + strand, within MMJJ_RS04755at 892.256 kb on - strand, within MMJJ_RS04755at 892.256 kb on - strand, within MMJJ_RS04755at 892.260 kb on - strand, within MMJJ_RS04755at 892.260 kb on - strand, within MMJJ_RS04755at 892.260 kb on - strand, within MMJJ_RS04755at 892.260 kb on - strand, within MMJJ_RS04755at 892.261 kb on + strand, within MMJJ_RS04755at 892.261 kb on + strand, within MMJJ_RS04755at 892.261 kb on + strand, within MMJJ_RS04755at 892.264 kb on + strand, within MMJJ_RS04755at 892.291 kb on - strand, within MMJJ_RS04755at 892.292 kb on + strand, within MMJJ_RS04755at 892.328 kb on + strand, within MMJJ_RS04755at 892.331 kb on - strand, within MMJJ_RS04755at 892.331 kb on - strand, within MMJJ_RS04755at 892.332 kb on + strand, within MMJJ_RS04755at 892.332 kb on + strand, within MMJJ_RS04755at 892.445 kb on - strand, within MMJJ_RS04755at 892.457 kb on - strand, within MMJJ_RS04755at 892.484 kb on - strand, within MMJJ_RS04755at 892.514 kb on - strand, within MMJJ_RS04755at 892.546 kb on - strand, within MMJJ_RS04755at 892.548 kb on - strand, within MMJJ_RS04755at 892.553 kb on - strand, within MMJJ_RS04755at 892.553 kb on - strand, within MMJJ_RS04755at 892.553 kb on - strandat 892.557 kb on - strand, within MMJJ_RS04755at 892.558 kb on + strand, within MMJJ_RS04755at 892.558 kb on + strand, within MMJJ_RS04755at 892.563 kb on + strand, within MMJJ_RS04755at 892.637 kb on - strand, within MMJJ_RS04755at 892.671 kb on + strand, within MMJJ_RS04755at 892.676 kb on - strand, within MMJJ_RS04755at 892.694 kb on - strand, within MMJJ_RS04755at 892.699 kb on + strand, within MMJJ_RS04755at 892.719 kb on - strand, within MMJJ_RS04755at 892.720 kb on + strand, within MMJJ_RS04755at 892.773 kb on + strand, within MMJJ_RS04755at 892.790 kb on + strand, within MMJJ_RS04755at 892.860 kb on + strand, within MMJJ_RS04755at 892.888 kb on + strand, within MMJJ_RS04755at 892.964 kb on - strand, within MMJJ_RS04755at 892.992 kb on - strandat 893.036 kb on - strandat 893.037 kb on + strandat 893.037 kb on + strandat 893.045 kb on - strandat 893.073 kb on + strandat 893.077 kb on - strandat 893.077 kb on - strandat 893.078 kb on + strandat 893.087 kb on + strandat 893.096 kb on - strandat 893.142 kb on - strandat 893.401 kb on + strand, within MMJJ_RS04760at 893.401 kb on + strand, within MMJJ_RS04760at 893.478 kb on + strand, within MMJJ_RS04760at 893.479 kb on - strand, within MMJJ_RS04760at 893.482 kb on - strand, within MMJJ_RS04760at 893.653 kb on - strand, within MMJJ_RS04760at 893.811 kb on - strand, within MMJJ_RS04760at 893.811 kb on - strand, within MMJJ_RS04760at 893.811 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.874 kb on - strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.875 kb on + strand, within MMJJ_RS04760at 893.880 kb on - strand, within MMJJ_RS04760at 893.881 kb on + strand, within MMJJ_RS04760at 893.899 kb on - strand, within MMJJ_RS04760at 894.037 kb on + strand, within MMJJ_RS04760at 894.037 kb on + strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.073 kb on - strand, within MMJJ_RS04760at 894.074 kb on + strand, within MMJJ_RS04760

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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891,087 - MMJJ_RS04750 0.15 -2.6
891,087 - MMJJ_RS04750 0.15 -1.8
891,087 - MMJJ_RS04750 0.15 +1.0
891,087 - MMJJ_RS04750 0.15 -1.8
891,088 + MMJJ_RS04750 0.15 +0.1
891,100 - MMJJ_RS04750 0.16 -1.3
891,151 + MMJJ_RS04750 0.21 -2.3
891,153 - MMJJ_RS04750 0.21 -2.9
891,154 + MMJJ_RS04750 0.21 -2.2
891,182 + MMJJ_RS04750 0.24 -2.8
891,196 + MMJJ_RS04750 0.25 -0.6
891,241 + MMJJ_RS04750 0.29 -2.6
891,253 - MMJJ_RS04750 0.30 +0.2
891,295 + MMJJ_RS04750 0.34 -3.1
891,295 + MMJJ_RS04750 0.34 -1.7
891,364 + MMJJ_RS04750 0.41 -0.4
891,367 - MMJJ_RS04750 0.41 -1.7
891,367 - MMJJ_RS04750 0.41 +0.6
891,368 + MMJJ_RS04750 0.41 -1.8
891,368 + MMJJ_RS04750 0.41 -0.3
891,402 - MMJJ_RS04750 0.44 -0.5
891,445 + MMJJ_RS04750 0.48 -0.7
891,458 + MMJJ_RS04750 0.50 -1.1
891,514 + MMJJ_RS04750 0.55 +3.8
891,527 - MMJJ_RS04750 0.56 +1.8
891,583 + MMJJ_RS04750 0.61 -1.1
891,611 - MMJJ_RS04750 0.64 -0.6
891,611 - MMJJ_RS04750 0.64 -2.8
891,616 - MMJJ_RS04750 0.64 -1.4
891,663 - MMJJ_RS04750 0.69 +0.3
891,697 - MMJJ_RS04750 0.72 -0.4
891,754 + MMJJ_RS04750 0.77 -0.6
891,862 - MMJJ_RS04750 0.88 -0.3
891,913 - -1.1
891,914 + -1.7
891,914 + -2.6
891,992 - +0.9
891,997 + -1.5
891,997 + -0.6
892,000 + -1.0
892,002 - -1.8
892,003 + -0.5
892,009 - -2.1
892,010 + -0.6
892,038 + -0.9
892,059 + -3.2
892,070 - -1.5
892,107 + -0.5
892,112 - -2.4
892,112 - -0.1
892,125 + -1.9
892,152 + -1.4
892,155 - -1.1
892,156 + -1.2
892,181 - MMJJ_RS04755 0.12 -1.5
892,182 + MMJJ_RS04755 0.12 -3.4
892,210 + -0.1
892,210 + MMJJ_RS04755 0.15 -3.2
892,256 - MMJJ_RS04755 0.20 -2.2
892,256 - MMJJ_RS04755 0.20 -0.8
892,260 - MMJJ_RS04755 0.20 -0.6
892,260 - MMJJ_RS04755 0.20 -2.9
892,260 - MMJJ_RS04755 0.20 -1.7
892,260 - MMJJ_RS04755 0.20 -2.4
892,261 + MMJJ_RS04755 0.20 -0.7
892,261 + MMJJ_RS04755 0.20 +0.1
892,261 + MMJJ_RS04755 0.20 -0.8
892,264 + MMJJ_RS04755 0.20 -1.4
892,291 - MMJJ_RS04755 0.23 -2.1
892,292 + MMJJ_RS04755 0.23 -3.4
892,328 + MMJJ_RS04755 0.27 -2.9
892,331 - MMJJ_RS04755 0.27 -2.4
892,331 - MMJJ_RS04755 0.27 -1.7
892,332 + MMJJ_RS04755 0.27 -2.5
892,332 + MMJJ_RS04755 0.27 -1.4
892,445 - MMJJ_RS04755 0.38 -2.9
892,457 - MMJJ_RS04755 0.39 -2.6
892,484 - MMJJ_RS04755 0.42 -1.8
892,514 - MMJJ_RS04755 0.45 -1.8
892,546 - MMJJ_RS04755 0.48 -0.3
892,548 - MMJJ_RS04755 0.48 -1.2
892,553 - MMJJ_RS04755 0.49 -1.8
892,553 - MMJJ_RS04755 0.49 -2.3
892,553 - -0.9
892,557 - MMJJ_RS04755 0.49 -1.0
892,558 + MMJJ_RS04755 0.49 -1.7
892,558 + MMJJ_RS04755 0.49 -0.8
892,563 + MMJJ_RS04755 0.50 -0.1
892,637 - MMJJ_RS04755 0.57 +2.2
892,671 + MMJJ_RS04755 0.60 -0.2
892,676 - MMJJ_RS04755 0.61 -2.2
892,694 - MMJJ_RS04755 0.62 -1.0
892,699 + MMJJ_RS04755 0.63 -4.0
892,719 - MMJJ_RS04755 0.65 -2.9
892,720 + MMJJ_RS04755 0.65 -3.7
892,773 + MMJJ_RS04755 0.70 -1.2
892,790 + MMJJ_RS04755 0.72 -0.8
892,860 + MMJJ_RS04755 0.79 -0.4
892,888 + MMJJ_RS04755 0.81 -2.6
892,964 - MMJJ_RS04755 0.89 -1.8
892,992 - -0.5
893,036 - -0.7
893,037 + -2.4
893,037 + -2.0
893,045 - -2.6
893,073 + -0.6
893,077 - -1.0
893,077 - +0.7
893,078 + -0.5
893,087 + -0.7
893,096 - +0.6
893,142 - -2.3
893,401 + MMJJ_RS04760 0.19 -0.9
893,401 + MMJJ_RS04760 0.19 +0.4
893,478 + MMJJ_RS04760 0.24 -2.7
893,479 - MMJJ_RS04760 0.24 -2.6
893,482 - MMJJ_RS04760 0.24 -2.3
893,653 - MMJJ_RS04760 0.36 -1.7
893,811 - MMJJ_RS04760 0.46 -1.6
893,811 - MMJJ_RS04760 0.46 -0.7
893,811 - MMJJ_RS04760 0.46 -1.0
893,874 - MMJJ_RS04760 0.50 -1.2
893,874 - MMJJ_RS04760 0.50 -2.2
893,874 - MMJJ_RS04760 0.50 -1.8
893,875 + MMJJ_RS04760 0.50 -3.6
893,875 + MMJJ_RS04760 0.50 -2.9
893,875 + MMJJ_RS04760 0.50 -2.2
893,875 + MMJJ_RS04760 0.50 -1.4
893,875 + MMJJ_RS04760 0.50 -1.4
893,880 - MMJJ_RS04760 0.50 -1.4
893,881 + MMJJ_RS04760 0.50 -3.1
893,899 - MMJJ_RS04760 0.52 -2.3
894,037 + MMJJ_RS04760 0.61 -1.4
894,037 + MMJJ_RS04760 0.61 -2.1
894,073 - MMJJ_RS04760 0.63 -1.9
894,073 - MMJJ_RS04760 0.63 -2.8
894,073 - MMJJ_RS04760 0.63 -2.7
894,073 - MMJJ_RS04760 0.63 -2.8
894,073 - MMJJ_RS04760 0.63 -1.4
894,073 - MMJJ_RS04760 0.63 -1.1
894,074 + MMJJ_RS04760 0.63 -3.2

Or see this region's nucleotide sequence