Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02095

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02085 and MMJJ_RS02090 are separated by 19 nucleotidesMMJJ_RS02090 and MMJJ_RS02095 are separated by 64 nucleotidesMMJJ_RS02095 and MMJJ_RS02100 are separated by 151 nucleotidesMMJJ_RS02100 and MMJJ_RS02105 are separated by 59 nucleotides MMJJ_RS02085: MMJJ_RS02085 - hypothetical protein, at 397,225 to 398,148 _RS02085 MMJJ_RS02090: MMJJ_RS02090 - tyramine--L-glutamate ligase, at 398,168 to 399,076 _RS02090 MMJJ_RS02095: MMJJ_RS02095 - DUF2124 family protein, at 399,141 to 399,623 _RS02095 MMJJ_RS02100: MMJJ_RS02100 - hypothetical protein, at 399,775 to 400,065 _RS02100 MMJJ_RS02105: MMJJ_RS02105 - right-handed parallel beta-helix repeat-containing protein, at 400,125 to 403,277 _RS02105 Position (kb) 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 398.184 kb on - strandat 398.261 kb on + strand, within MMJJ_RS02090at 398.268 kb on - strand, within MMJJ_RS02090at 398.374 kb on + strand, within MMJJ_RS02090at 398.458 kb on + strand, within MMJJ_RS02090at 398.463 kb on + strand, within MMJJ_RS02090at 398.479 kb on + strand, within MMJJ_RS02090at 398.527 kb on + strand, within MMJJ_RS02090at 398.556 kb on + strand, within MMJJ_RS02090at 398.667 kb on + strand, within MMJJ_RS02090at 398.752 kb on - strand, within MMJJ_RS02090at 398.753 kb on + strandat 398.795 kb on + strand, within MMJJ_RS02090at 398.804 kb on + strand, within MMJJ_RS02090at 398.845 kb on - strand, within MMJJ_RS02090at 398.916 kb on - strand, within MMJJ_RS02090at 399.100 kb on + strandat 399.109 kb on + strandat 399.113 kb on - strandat 399.113 kb on - strandat 399.152 kb on + strandat 399.192 kb on + strand, within MMJJ_RS02095at 399.226 kb on - strand, within MMJJ_RS02095at 399.288 kb on + strand, within MMJJ_RS02095at 399.309 kb on - strand, within MMJJ_RS02095at 399.310 kb on + strand, within MMJJ_RS02095at 399.314 kb on - strand, within MMJJ_RS02095at 399.314 kb on - strand, within MMJJ_RS02095at 399.357 kb on + strand, within MMJJ_RS02095at 399.357 kb on + strand, within MMJJ_RS02095at 399.408 kb on + strand, within MMJJ_RS02095at 399.475 kb on - strand, within MMJJ_RS02095at 399.484 kb on - strand, within MMJJ_RS02095at 399.489 kb on + strand, within MMJJ_RS02095at 399.515 kb on + strand, within MMJJ_RS02095at 399.515 kb on + strand, within MMJJ_RS02095at 399.520 kb on - strand, within MMJJ_RS02095at 399.520 kb on - strand, within MMJJ_RS02095at 399.520 kb on - strand, within MMJJ_RS02095at 399.521 kb on + strand, within MMJJ_RS02095at 399.535 kb on - strand, within MMJJ_RS02095at 399.576 kb on + strandat 399.580 kb on - strandat 399.584 kb on + strandat 399.584 kb on + strandat 399.625 kb on - strandat 399.654 kb on + strandat 399.711 kb on - strandat 399.711 kb on - strandat 399.711 kb on - strandat 399.711 kb on - strandat 399.711 kb on - strandat 399.712 kb on + strandat 399.716 kb on + strandat 399.716 kb on + strandat 399.737 kb on + strandat 399.741 kb on + strandat 399.741 kb on + strandat 399.742 kb on - strandat 399.742 kb on - strandat 399.742 kb on - strandat 399.743 kb on + strandat 399.804 kb on + strand, within MMJJ_RS02100at 399.817 kb on - strand, within MMJJ_RS02100at 399.817 kb on - strand, within MMJJ_RS02100at 399.822 kb on - strand, within MMJJ_RS02100at 399.822 kb on - strand, within MMJJ_RS02100at 399.823 kb on + strand, within MMJJ_RS02100at 399.823 kb on + strand, within MMJJ_RS02100at 399.823 kb on + strand, within MMJJ_RS02100at 399.824 kb on - strand, within MMJJ_RS02100at 399.825 kb on + strand, within MMJJ_RS02100at 399.825 kb on + strand, within MMJJ_RS02100at 399.825 kb on + strand, within MMJJ_RS02100at 399.825 kb on + strand, within MMJJ_RS02100at 399.825 kb on + strand, within MMJJ_RS02100at 399.912 kb on + strand, within MMJJ_RS02100at 399.954 kb on + strand, within MMJJ_RS02100at 399.961 kb on - strand, within MMJJ_RS02100at 399.962 kb on + strand, within MMJJ_RS02100at 399.962 kb on + strand, within MMJJ_RS02100at 399.965 kb on + strand, within MMJJ_RS02100at 399.965 kb on + strand, within MMJJ_RS02100at 399.987 kb on - strand, within MMJJ_RS02100at 399.993 kb on + strand, within MMJJ_RS02100at 400.022 kb on + strand, within MMJJ_RS02100at 400.022 kb on + strand, within MMJJ_RS02100at 400.210 kb on + strandat 400.247 kb on - strandat 400.247 kb on - strandat 400.247 kb on - strandat 400.247 kb on - strandat 400.248 kb on + strandat 400.248 kb on + strandat 400.248 kb on + strandat 400.248 kb on + strandat 400.249 kb on - strandat 400.249 kb on - strandat 400.249 kb on - strandat 400.249 kb on - strandat 400.251 kb on - strandat 400.252 kb on + strandat 400.252 kb on + strandat 400.300 kb on + strandat 400.370 kb on + strandat 400.462 kb on + strand, within MMJJ_RS02105at 400.499 kb on + strand, within MMJJ_RS02105at 400.499 kb on + strand, within MMJJ_RS02105at 400.500 kb on - strand, within MMJJ_RS02105at 400.500 kb on - strand, within MMJJ_RS02105at 400.500 kb on - strand, within MMJJ_RS02105at 400.500 kb on - strand, within MMJJ_RS02105at 400.500 kb on - strand, within MMJJ_RS02105at 400.501 kb on + strand, within MMJJ_RS02105at 400.501 kb on + strand, within MMJJ_RS02105at 400.501 kb on + strand, within MMJJ_RS02105at 400.501 kb on + strand, within MMJJ_RS02105at 400.501 kb on + strand, within MMJJ_RS02105at 400.503 kb on + strand, within MMJJ_RS02105at 400.503 kb on + strand, within MMJJ_RS02105at 400.503 kb on + strand, within MMJJ_RS02105at 400.503 kb on + strand, within MMJJ_RS02105at 400.503 kb on + strand, within MMJJ_RS02105at 400.533 kb on - strand, within MMJJ_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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398,184 - -1.9
398,261 + MMJJ_RS02090 0.10 -2.0
398,268 - MMJJ_RS02090 0.11 -2.1
398,374 + MMJJ_RS02090 0.23 -1.8
398,458 + MMJJ_RS02090 0.32 -1.5
398,463 + MMJJ_RS02090 0.32 -0.9
398,479 + MMJJ_RS02090 0.34 -3.4
398,527 + MMJJ_RS02090 0.39 -1.8
398,556 + MMJJ_RS02090 0.43 -1.0
398,667 + MMJJ_RS02090 0.55 -0.9
398,752 - MMJJ_RS02090 0.64 -2.4
398,753 + -0.7
398,795 + MMJJ_RS02090 0.69 -0.7
398,804 + MMJJ_RS02090 0.70 -2.6
398,845 - MMJJ_RS02090 0.74 -1.1
398,916 - MMJJ_RS02090 0.82 -1.5
399,100 + +1.1
399,109 + -0.5
399,113 - +0.1
399,113 - +0.3
399,152 + +1.5
399,192 + MMJJ_RS02095 0.11 +0.2
399,226 - MMJJ_RS02095 0.18 -0.1
399,288 + MMJJ_RS02095 0.30 +0.6
399,309 - MMJJ_RS02095 0.35 +2.0
399,310 + MMJJ_RS02095 0.35 +1.2
399,314 - MMJJ_RS02095 0.36 +1.4
399,314 - MMJJ_RS02095 0.36 +0.4
399,357 + MMJJ_RS02095 0.45 -0.9
399,357 + MMJJ_RS02095 0.45 +0.4
399,408 + MMJJ_RS02095 0.55 +0.8
399,475 - MMJJ_RS02095 0.69 +0.4
399,484 - MMJJ_RS02095 0.71 -0.2
399,489 + MMJJ_RS02095 0.72 +0.5
399,515 + MMJJ_RS02095 0.77 -0.9
399,515 + MMJJ_RS02095 0.77 -0.6
399,520 - MMJJ_RS02095 0.78 +0.9
399,520 - MMJJ_RS02095 0.78 +0.9
399,520 - MMJJ_RS02095 0.78 +0.5
399,521 + MMJJ_RS02095 0.79 +4.9
399,535 - MMJJ_RS02095 0.82 -0.3
399,576 + -0.0
399,580 - +0.4
399,584 + +1.3
399,584 + +0.2
399,625 - +0.8
399,654 + +1.2
399,711 - +5.3
399,711 - +1.1
399,711 - -0.6
399,711 - +2.7
399,711 - +0.5
399,712 + +0.9
399,716 + +0.0
399,716 + +0.1
399,737 + +1.7
399,741 + -1.6
399,741 + +0.5
399,742 - -0.6
399,742 - -0.7
399,742 - -2.7
399,743 + -1.1
399,804 + MMJJ_RS02100 0.10 +2.2
399,817 - MMJJ_RS02100 0.14 -1.7
399,817 - MMJJ_RS02100 0.14 +0.1
399,822 - MMJJ_RS02100 0.16 -2.2
399,822 - MMJJ_RS02100 0.16 +0.2
399,823 + MMJJ_RS02100 0.16 -0.5
399,823 + MMJJ_RS02100 0.16 +1.1
399,823 + MMJJ_RS02100 0.16 -0.2
399,824 - MMJJ_RS02100 0.17 -0.5
399,825 + MMJJ_RS02100 0.17 +0.9
399,825 + MMJJ_RS02100 0.17 -0.9
399,825 + MMJJ_RS02100 0.17 +1.6
399,825 + MMJJ_RS02100 0.17 +0.2
399,825 + MMJJ_RS02100 0.17 -0.1
399,912 + MMJJ_RS02100 0.47 +0.6
399,954 + MMJJ_RS02100 0.62 +0.6
399,961 - MMJJ_RS02100 0.64 +0.8
399,962 + MMJJ_RS02100 0.64 +0.1
399,962 + MMJJ_RS02100 0.64 -1.0
399,965 + MMJJ_RS02100 0.65 -0.4
399,965 + MMJJ_RS02100 0.65 -1.1
399,987 - MMJJ_RS02100 0.73 +0.3
399,993 + MMJJ_RS02100 0.75 -0.1
400,022 + MMJJ_RS02100 0.85 +0.6
400,022 + MMJJ_RS02100 0.85 +1.8
400,210 + +0.4
400,247 - +0.2
400,247 - -1.8
400,247 - +0.3
400,247 - -0.1
400,248 + +0.4
400,248 + +0.6
400,248 + -0.2
400,248 + +1.0
400,249 - +0.2
400,249 - -1.7
400,249 - +1.5
400,249 - -1.4
400,251 - +0.4
400,252 + +0.1
400,252 + -0.2
400,300 + -1.4
400,370 + +0.5
400,462 + MMJJ_RS02105 0.11 +0.8
400,499 + MMJJ_RS02105 0.12 +0.6
400,499 + MMJJ_RS02105 0.12 +1.1
400,500 - MMJJ_RS02105 0.12 -0.5
400,500 - MMJJ_RS02105 0.12 -0.8
400,500 - MMJJ_RS02105 0.12 -0.4
400,500 - MMJJ_RS02105 0.12 -2.0
400,500 - MMJJ_RS02105 0.12 +0.1
400,501 + MMJJ_RS02105 0.12 +0.9
400,501 + MMJJ_RS02105 0.12 +0.1
400,501 + MMJJ_RS02105 0.12 +0.7
400,501 + MMJJ_RS02105 0.12 +0.7
400,501 + MMJJ_RS02105 0.12 +1.1
400,503 + MMJJ_RS02105 0.12 -1.4
400,503 + MMJJ_RS02105 0.12 +0.7
400,503 + MMJJ_RS02105 0.12 +0.2
400,503 + MMJJ_RS02105 0.12 +0.1
400,503 + MMJJ_RS02105 0.12 +0.3
400,533 - MMJJ_RS02105 0.13 -0.7

Or see this region's nucleotide sequence