Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4887

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4886 and Psyr_4887 are separated by 33 nucleotidesPsyr_4887 and Psyr_4888 are separated by 3 nucleotides Psyr_4886: Psyr_4886 - Peptidase M23B, at 5,795,992 to 5,797,317 _4886 Psyr_4887: Psyr_4887 - Peptidase S41A, C-terminal protease, at 5,797,351 to 5,798,688 _4887 Psyr_4888: Psyr_4888 - Protein of unknown function DUF610, at 5,798,692 to 5,799,474 _4888 Position (kb) 5797 5798 5799Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5796.355 kb on + strand, within Psyr_4886at 5796.355 kb on + strand, within Psyr_4886at 5796.356 kb on - strand, within Psyr_4886at 5796.356 kb on - strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.415 kb on + strand, within Psyr_4886at 5796.416 kb on - strand, within Psyr_4886at 5796.416 kb on - strand, within Psyr_4886at 5796.422 kb on - strand, within Psyr_4886at 5796.422 kb on - strand, within Psyr_4886at 5796.449 kb on + strand, within Psyr_4886at 5796.450 kb on - strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.825 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.049 kb on + strand, within Psyr_4886at 5797.050 kb on - strand, within Psyr_4886at 5797.050 kb on - strand, within Psyr_4886at 5797.050 kb on - strand, within Psyr_4886at 5797.050 kb on - strand, within Psyr_4886at 5797.050 kb on - strand, within Psyr_4886at 5797.135 kb on + strand, within Psyr_4886at 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.190 kb on + strandat 5797.191 kb on - strandat 5797.191 kb on - strandat 5797.191 kb on - strandat 5797.191 kb on - strandat 5797.191 kb on - strandat 5797.191 kb on - strandat 5797.225 kb on - strandat 5797.225 kb on - strandat 5797.252 kb on + strandat 5797.252 kb on + strandat 5797.252 kb on + strandat 5797.252 kb on + strandat 5797.252 kb on + strandat 5797.252 kb on + strandat 5797.253 kb on - strandat 5797.253 kb on - strandat 5797.253 kb on - strandat 5797.253 kb on - strandat 5797.253 kb on - strandat 5797.253 kb on - strandat 5797.261 kb on - strandat 5797.315 kb on + strandat 5797.315 kb on + strandat 5797.329 kb on + strandat 5797.329 kb on + strandat 5797.330 kb on - strandat 5797.330 kb on - strandat 5797.335 kb on + strandat 5797.555 kb on + strand, within Psyr_4887at 5797.555 kb on + strand, within Psyr_4887at 5797.555 kb on + strand, within Psyr_4887at 5797.556 kb on - strand, within Psyr_4887at 5797.556 kb on - strand, within Psyr_4887at 5797.636 kb on + strand, within Psyr_4887at 5797.636 kb on + strand, within Psyr_4887at 5797.636 kb on + strand, within Psyr_4887at 5797.637 kb on - strand, within Psyr_4887at 5797.990 kb on + strand, within Psyr_4887at 5797.990 kb on + strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5798.176 kb on + strand, within Psyr_4887at 5798.176 kb on + strand, within Psyr_4887at 5798.177 kb on - strand, within Psyr_4887at 5798.196 kb on + strand, within Psyr_4887at 5798.196 kb on + strand, within Psyr_4887at 5798.197 kb on - strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.481 kb on - strand, within Psyr_4887at 5798.481 kb on - strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.670 kb on + strandat 5798.671 kb on - strandat 5798.712 kb on - strandat 5798.785 kb on + strand, within Psyr_4888at 5798.786 kb on - strand, within Psyr_4888at 5799.125 kb on + strand, within Psyr_4888at 5799.125 kb on + strand, within Psyr_4888at 5799.126 kb on - strand, within Psyr_4888at 5799.126 kb on - strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.301 kb on + strand, within Psyr_4888at 5799.301 kb on + strand, within Psyr_4888at 5799.302 kb on - strand, within Psyr_4888at 5799.302 kb on - strand, within Psyr_4888at 5799.350 kb on + strand, within Psyr_4888at 5799.466 kb on + strandat 5799.513 kb on + strandat 5799.513 kb on + strandat 5799.514 kb on - strandat 5799.514 kb on - strandat 5799.547 kb on + strandat 5799.547 kb on + strandat 5799.563 kb on + strandat 5799.617 kb on + strandat 5799.618 kb on - strandat 5799.642 kb on + strandat 5799.643 kb on - strandat 5799.643 kb on - strandat 5799.677 kb on + strandat 5799.678 kb on - strandat 5799.678 kb on - strandat 5799.678 kb on - strandat 5799.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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5,796,355 + Psyr_4886 0.27 +0.4
5,796,355 + Psyr_4886 0.27 -0.1
5,796,356 - Psyr_4886 0.27 -0.5
5,796,356 - Psyr_4886 0.27 -0.5
5,796,412 + Psyr_4886 0.32 -0.6
5,796,412 + Psyr_4886 0.32 +0.8
5,796,412 + Psyr_4886 0.32 +0.4
5,796,412 + Psyr_4886 0.32 -0.3
5,796,412 + Psyr_4886 0.32 -2.3
5,796,412 + Psyr_4886 0.32 +0.8
5,796,412 + Psyr_4886 0.32 +0.1
5,796,413 - Psyr_4886 0.32 -0.7
5,796,413 - Psyr_4886 0.32 +0.0
5,796,413 - Psyr_4886 0.32 -0.8
5,796,415 + Psyr_4886 0.32 +0.2
5,796,416 - Psyr_4886 0.32 -0.3
5,796,416 - Psyr_4886 0.32 -0.1
5,796,422 - Psyr_4886 0.32 -0.2
5,796,422 - Psyr_4886 0.32 +1.1
5,796,449 + Psyr_4886 0.34 +1.1
5,796,450 - Psyr_4886 0.35 +0.5
5,796,616 + Psyr_4886 0.47 +0.2
5,796,616 + Psyr_4886 0.47 +1.0
5,796,616 + Psyr_4886 0.47 -1.6
5,796,616 + Psyr_4886 0.47 +0.9
5,796,616 + Psyr_4886 0.47 +1.5
5,796,616 + Psyr_4886 0.47 -0.1
5,796,616 + Psyr_4886 0.47 +1.6
5,796,617 - Psyr_4886 0.47 -0.6
5,796,617 - Psyr_4886 0.47 +0.6
5,796,617 - Psyr_4886 0.47 -0.1
5,796,825 + Psyr_4886 0.63 +0.7
5,797,049 + Psyr_4886 0.80 +0.9
5,797,049 + Psyr_4886 0.80 +0.1
5,797,049 + Psyr_4886 0.80 +1.1
5,797,049 + Psyr_4886 0.80 +0.0
5,797,049 + Psyr_4886 0.80 +0.2
5,797,049 + Psyr_4886 0.80 -1.2
5,797,049 + Psyr_4886 0.80 -0.0
5,797,049 + Psyr_4886 0.80 +0.2
5,797,050 - Psyr_4886 0.80 +0.7
5,797,050 - Psyr_4886 0.80 -0.8
5,797,050 - Psyr_4886 0.80 -0.3
5,797,050 - Psyr_4886 0.80 -0.9
5,797,050 - Psyr_4886 0.80 -0.7
5,797,135 + Psyr_4886 0.86 +0.2
5,797,190 + -0.2
5,797,190 + -0.4
5,797,190 + +0.6
5,797,190 + -1.4
5,797,190 + -0.8
5,797,190 + -0.3
5,797,190 + +0.7
5,797,191 - -0.2
5,797,191 - -0.7
5,797,191 - +0.9
5,797,191 - +0.1
5,797,191 - -0.2
5,797,191 - -0.7
5,797,225 - +0.7
5,797,225 - -0.6
5,797,252 + +1.3
5,797,252 + -1.8
5,797,252 + -0.3
5,797,252 + +1.3
5,797,252 + +0.1
5,797,252 + +1.1
5,797,253 - -1.9
5,797,253 - -1.1
5,797,253 - -1.2
5,797,253 - -0.7
5,797,253 - +0.4
5,797,253 - -1.3
5,797,261 - -1.4
5,797,315 + -0.1
5,797,315 + +0.4
5,797,329 + +3.1
5,797,329 + -0.6
5,797,330 - -2.0
5,797,330 - -0.9
5,797,335 + +1.0
5,797,555 + Psyr_4887 0.15 -0.6
5,797,555 + Psyr_4887 0.15 -1.5
5,797,555 + Psyr_4887 0.15 +2.2
5,797,556 - Psyr_4887 0.15 +0.1
5,797,556 - Psyr_4887 0.15 +0.1
5,797,636 + Psyr_4887 0.21 -0.3
5,797,636 + Psyr_4887 0.21 -2.1
5,797,636 + Psyr_4887 0.21 -1.0
5,797,637 - Psyr_4887 0.21 -1.8
5,797,990 + Psyr_4887 0.48 -0.9
5,797,990 + Psyr_4887 0.48 +1.4
5,797,991 - Psyr_4887 0.48 -0.9
5,797,991 - Psyr_4887 0.48 -0.9
5,797,991 - Psyr_4887 0.48 -0.3
5,797,991 - Psyr_4887 0.48 -0.0
5,798,176 + Psyr_4887 0.62 -0.9
5,798,176 + Psyr_4887 0.62 -0.3
5,798,177 - Psyr_4887 0.62 -1.0
5,798,196 + Psyr_4887 0.63 -1.0
5,798,196 + Psyr_4887 0.63 -2.2
5,798,197 - Psyr_4887 0.63 -1.0
5,798,422 + Psyr_4887 0.80 -0.3
5,798,422 + Psyr_4887 0.80 -0.9
5,798,422 + Psyr_4887 0.80 -1.3
5,798,422 + Psyr_4887 0.80 -1.5
5,798,422 + Psyr_4887 0.80 -1.6
5,798,422 + Psyr_4887 0.80 +0.5
5,798,422 + Psyr_4887 0.80 +0.6
5,798,422 + Psyr_4887 0.80 -0.2
5,798,423 - Psyr_4887 0.80 -1.3
5,798,423 - Psyr_4887 0.80 -0.8
5,798,423 - Psyr_4887 0.80 +0.6
5,798,423 - Psyr_4887 0.80 -2.6
5,798,425 + Psyr_4887 0.80 -1.7
5,798,425 + Psyr_4887 0.80 -1.8
5,798,425 + Psyr_4887 0.80 -1.5
5,798,425 + Psyr_4887 0.80 -0.9
5,798,425 + Psyr_4887 0.80 +1.0
5,798,426 - Psyr_4887 0.80 +0.4
5,798,426 - Psyr_4887 0.80 -0.3
5,798,426 - Psyr_4887 0.80 +0.4
5,798,426 - Psyr_4887 0.80 -0.0
5,798,480 + Psyr_4887 0.84 -0.5
5,798,480 + Psyr_4887 0.84 -1.4
5,798,480 + Psyr_4887 0.84 -0.3
5,798,481 - Psyr_4887 0.84 +0.6
5,798,481 - Psyr_4887 0.84 -0.5
5,798,521 + Psyr_4887 0.87 -0.6
5,798,521 + Psyr_4887 0.87 -0.9
5,798,521 + Psyr_4887 0.87 -0.2
5,798,521 + Psyr_4887 0.87 -0.1
5,798,521 + Psyr_4887 0.87 -0.1
5,798,521 + Psyr_4887 0.87 -0.3
5,798,522 - Psyr_4887 0.88 +0.2
5,798,522 - Psyr_4887 0.88 +1.5
5,798,522 - Psyr_4887 0.88 -0.6
5,798,670 + -1.5
5,798,671 - +0.9
5,798,712 - -0.1
5,798,785 + Psyr_4888 0.12 +1.1
5,798,786 - Psyr_4888 0.12 -0.7
5,799,125 + Psyr_4888 0.55 -0.5
5,799,125 + Psyr_4888 0.55 -1.2
5,799,126 - Psyr_4888 0.55 -0.4
5,799,126 - Psyr_4888 0.55 +0.2
5,799,227 + Psyr_4888 0.68 +0.1
5,799,227 + Psyr_4888 0.68 -2.5
5,799,227 + Psyr_4888 0.68 -0.2
5,799,227 + Psyr_4888 0.68 +0.0
5,799,227 + Psyr_4888 0.68 +0.4
5,799,228 - Psyr_4888 0.68 -1.8
5,799,228 - Psyr_4888 0.68 +0.5
5,799,228 - Psyr_4888 0.68 -0.3
5,799,228 - Psyr_4888 0.68 -0.8
5,799,228 - Psyr_4888 0.68 -1.2
5,799,301 + Psyr_4888 0.78 -0.3
5,799,301 + Psyr_4888 0.78 -1.2
5,799,302 - Psyr_4888 0.78 +0.9
5,799,302 - Psyr_4888 0.78 +0.1
5,799,350 + Psyr_4888 0.84 -0.9
5,799,466 + +0.9
5,799,513 + +1.0
5,799,513 + +0.5
5,799,514 - +0.7
5,799,514 - -1.5
5,799,547 + +0.2
5,799,547 + +0.1
5,799,563 + -1.3
5,799,617 + -0.5
5,799,618 - -0.2
5,799,642 + -0.0
5,799,643 - +0.6
5,799,643 - +0.9
5,799,677 + +0.7
5,799,678 - +0.2
5,799,678 - -1.5
5,799,678 - -1.0
5,799,678 - +0.0

Or see this region's nucleotide sequence