Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1843

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,122,390	+				-0.5
2,122,392	+				+0.6
2,122,393	-				+0.4
2,122,393	-				+0.1
2,122,460	+				-0.8
2,122,460	+				+2.8
2,122,460	+				+0.9
2,122,460	+				-1.6
2,122,460	+				-0.3
2,122,461	-				-0.0
2,122,461	-				+0.0
2,122,461	-				-0.1
2,122,487	+				-1.2
2,122,488	-				+0.3
2,122,496	+				+1.5
2,122,496	+				+4.1
2,122,496	+				-0.5
2,122,506	-				+1.2
2,122,523	+				-0.5
2,122,523	+				+1.1
2,122,524	-				-0.8
2,122,524	-				+1.5
2,122,543	+				+0.0
2,122,722	-		Psyr_1842	0.39	+0.1
2,122,781	+		Psyr_1842	0.49	-0.3
2,122,781	+		Psyr_1842	0.49	+0.7
2,122,781	+		Psyr_1842	0.49	+0.2
2,122,782	-		Psyr_1842	0.49	-1.1
2,122,826	+		Psyr_1842	0.57	-0.4
2,122,826	+		Psyr_1842	0.57	-1.2
2,122,921	+		Psyr_1842	0.72	-0.9
2,122,970	+		Psyr_1842	0.81	-0.6
2,122,970	+		Psyr_1842	0.81	-0.3
2,122,970	+		Psyr_1842	0.81	+0.2
2,122,970	+		Psyr_1842	0.81	-0.1
2,122,970	+		Psyr_1842	0.81	+0.2
2,122,970	+		Psyr_1842	0.81	+2.3
2,122,970	+		Psyr_1842	0.81	-1.4
2,122,970	+		Psyr_1842	0.81	+0.2
2,122,970	+		Psyr_1842	0.81	+0.1
2,122,971	-		Psyr_1842	0.81	+1.0
2,122,971	-		Psyr_1842	0.81	+0.2
2,122,971	-		Psyr_1842	0.81	-0.3
2,122,971	-		Psyr_1842	0.81	+0.4
2,122,971	-		Psyr_1842	0.81	+1.1
2,122,971	-		Psyr_1842	0.81	+0.6
2,122,971	-		Psyr_1842	0.81	+2.2
2,122,971	-		Psyr_1842	0.81	+0.3
2,122,971	-		Psyr_1842	0.81	+0.9
2,122,971	-		Psyr_1842	0.81	-0.8
2,122,971	-		Psyr_1842	0.81	+0.9
2,122,976	+		Psyr_1842	0.82	+0.0
2,122,977	-		Psyr_1842	0.82	+0.6
2,122,977	-		Psyr_1842	0.82	-0.0
2,123,067	-				-1.1
2,123,068	+				-0.5
2,123,068	+				+0.7
2,123,069	-				-1.8
2,123,069	-				-0.5
2,123,069	-				+0.1
2,123,074	+				+0.2
2,123,116	+				-1.3
2,123,116	+				-0.1
2,123,116	+				-0.5
2,123,116	+				+2.9
2,123,134	-				+1.2
2,123,267	+		Psyr_1843	0.39	+0.3
2,123,267	+		Psyr_1843	0.39	-1.0
2,123,398	+		Psyr_1843	0.73	-0.7
2,123,468	+				-1.4
2,123,468	+				+0.7
2,123,468	+				+1.0
2,123,468	+				-0.2
2,123,468	+				+0.6
2,123,468	+				+1.2
2,123,469	-				-0.1
2,123,469	-				-0.9
2,123,469	-				-0.4
2,123,469	-				-0.7
2,123,469	-				-0.2
2,123,553	+				+1.6
2,123,577	+		Psyr_1844	0.14	+0.9
2,123,577	+		Psyr_1844	0.14	+0.7
2,123,578	-		Psyr_1844	0.14	+0.4
2,123,578	-		Psyr_1844	0.14	-0.1
2,123,578	-		Psyr_1844	0.14	+0.1
2,123,578	-		Psyr_1844	0.14	+2.2
2,123,578	-		Psyr_1844	0.14	+0.1
2,123,578	-		Psyr_1844	0.14	+1.2
2,123,578	-		Psyr_1844	0.14	+0.2
2,123,902	+				-0.6
2,123,903	-				+1.7
2,124,202	+		Psyr_1845	0.41	+0.0
2,124,202	+		Psyr_1845	0.41	+1.0
2,124,202	+		Psyr_1845	0.41	-0.4
2,124,202	+		Psyr_1845	0.41	+0.8
2,124,202	+		Psyr_1845	0.41	+0.0
2,124,202	+		Psyr_1845	0.41	-1.1
2,124,202	+		Psyr_1845	0.41	-0.2
2,124,202	+		Psyr_1845	0.41	-2.4
2,124,202	+		Psyr_1845	0.41	-0.3
2,124,202	+		Psyr_1845	0.41	+1.0
2,124,203	-		Psyr_1845	0.42	-1.6
2,124,203	-		Psyr_1845	0.42	-2.0
2,124,203	-		Psyr_1845	0.42	+0.3
2,124,203	-		Psyr_1845	0.42	+1.0
2,124,203	-		Psyr_1845	0.42	-0.5
2,124,203	-		Psyr_1845	0.42	+1.1
2,124,203	-		Psyr_1845	0.42	+0.6
2,124,203	-		Psyr_1845	0.42	-0.5
2,124,260	-		Psyr_1845	0.52	+0.6
2,124,260	-		Psyr_1845	0.52	+0.4
2,124,415	+		Psyr_1845	0.80	-0.4
2,124,415	+		Psyr_1845	0.80	+0.1
2,124,416	-		Psyr_1845	0.81	-0.6
2,124,416	-		Psyr_1845	0.81	-0.5
2,124,502	+				+1.2
2,124,502	+				+1.6
2,124,502	+				-3.8
2,124,502	+				-2.1
2,124,502	+				-0.1