Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0832

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
941,831	+		Psyr_0831	0.34	-2.1
941,831	+		Psyr_0831	0.34	-1.0
941,832	-		Psyr_0831	0.34	-2.1
942,903	+				-0.9
942,904	-				+0.7
943,170	+		Psyr_0832	0.13	+0.7
943,171	-		Psyr_0832	0.13	-0.0
943,178	+		Psyr_0832	0.14	-0.3
943,178	+		Psyr_0832	0.14	+0.7
943,179	-		Psyr_0832	0.14	+0.7
943,179	-		Psyr_0832	0.14	+0.3
943,216	+		Psyr_0832	0.15	-1.7
943,217	-		Psyr_0832	0.15	-0.9
943,424	-		Psyr_0832	0.22	-2.3
943,818	-		Psyr_0832	0.35	-0.5
943,913	+		Psyr_0832	0.38	-2.0
943,914	-		Psyr_0832	0.39	+0.2
943,914	-		Psyr_0832	0.39	+0.3
943,914	-		Psyr_0832	0.39	-0.1
943,914	-		Psyr_0832	0.39	-1.9
943,914	-		Psyr_0832	0.39	-0.3
943,950	+		Psyr_0832	0.40	-0.3
944,047	-		Psyr_0832	0.43	-0.0
944,337	+		Psyr_0832	0.53	-0.3
944,337	+		Psyr_0832	0.53	-1.6
944,337	+		Psyr_0832	0.53	+0.7
944,337	+		Psyr_0832	0.53	+0.3
944,337	+		Psyr_0832	0.53	-1.3
944,337	+		Psyr_0832	0.53	-1.6
944,338	-		Psyr_0832	0.53	-0.5
944,338	-		Psyr_0832	0.53	+0.4
944,338	-		Psyr_0832	0.53	-1.5
944,338	-		Psyr_0832	0.53	+0.5
944,338	-		Psyr_0832	0.53	-2.3
944,361	+		Psyr_0832	0.54	-1.3
944,361	+		Psyr_0832	0.54	-1.6
944,361	+		Psyr_0832	0.54	+0.7
944,362	-		Psyr_0832	0.54	-1.6
944,362	-		Psyr_0832	0.54	-1.2
944,362	-		Psyr_0832	0.54	+0.1
944,362	-		Psyr_0832	0.54	-0.7
944,362	-		Psyr_0832	0.54	+1.4
944,362	-		Psyr_0832	0.54	-1.3
944,362	-		Psyr_0832	0.54	-0.1
944,362	-		Psyr_0832	0.54	+0.5
944,362	-		Psyr_0832	0.54	+0.7
944,362	-		Psyr_0832	0.54	+0.9
944,362	-		Psyr_0832	0.54	-0.2
944,362	-		Psyr_0832	0.54	-1.0
944,362	-		Psyr_0832	0.54	-0.9
944,362	-		Psyr_0832	0.54	+1.7
944,565	+		Psyr_0832	0.61	-0.5
944,565	+		Psyr_0832	0.61	-1.6
944,566	-		Psyr_0832	0.61	-0.1
944,631	+		Psyr_0832	0.63	-1.3
944,636	-		Psyr_0832	0.63	-3.3
944,659	-		Psyr_0832	0.64	-0.3
944,751	+		Psyr_0832	0.67	+1.7
944,808	+		Psyr_0832	0.69	-2.1
944,808	+		Psyr_0832	0.69	+2.3
944,955	+		Psyr_0832	0.74	+0.4
944,956	-		Psyr_0832	0.74	+0.1
944,956	-		Psyr_0832	0.74	-2.0
944,956	-		Psyr_0832	0.74	-1.3
944,956	-		Psyr_0832	0.74	+0.1
945,105	+		Psyr_0832	0.79	-1.3
945,106	-		Psyr_0832	0.79	+1.3
945,106	-		Psyr_0832	0.79	-1.3
945,106	-		Psyr_0832	0.79	-0.3
945,106	-		Psyr_0832	0.79	-0.1
945,115	-		Psyr_0832	0.79	-0.7
945,435	+				-1.2
945,436	-				+1.5
945,508	-				-0.6
945,601	-				-0.1
945,601	-				+1.0
945,601	-				-0.3
945,716	-				-1.9
945,716	-				+0.0
945,716	-				+1.5
945,784	+		Psyr_0833	0.40	-0.9
945,785	-		Psyr_0833	0.40	+0.3
945,785	-		Psyr_0833	0.40	+0.2
945,785	-		Psyr_0833	0.40	+1.5
945,785	-		Psyr_0833	0.40	-0.6
945,785	-		Psyr_0833	0.40	-0.9
945,785	-		Psyr_0833	0.40	+2.9
945,785	-		Psyr_0833	0.40	-1.4
945,785	-		Psyr_0833	0.40	+1.3
945,847	+		Psyr_0833	0.75	+0.0
945,848	-		Psyr_0833	0.76	-0.3
945,848	-		Psyr_0833	0.76	-0.2
945,848	-		Psyr_0833	0.76	+0.3
945,880	+				-0.9
945,880	+				-0.1
945,880	+				-0.9
945,881	-				+0.6
945,881	-				+0.4
945,881	-				-0.8
945,882	+				-0.9
945,882	+				-1.6
945,882	+				-2.9
945,882	+				-0.7
945,882	+				+0.7
945,882	+				+0.9
945,882	+				+1.7
945,883	-				+0.2
945,883	-				+1.4
945,883	-				-0.8
945,883	-				-0.7
945,883	-				-0.3
945,883	-				-0.4
945,883	-				+1.6
945,883	-				+2.3
945,883	-				-0.0
945,883	-				+0.3
945,883	-				-0.4
945,883	-				-0.1
945,883	-				-1.2
945,883	-				+0.7
945,883	-				-0.3
945,883	-				+1.0
945,883	-				+0.4
945,883	-				-0.9
945,883	-				+1.6
945,883	-				+0.0
945,883	-				+0.3
945,883	-				+0.1
945,886	+				-2.1
945,886	+				-0.3
945,886	+				-0.5
945,886	+				-1.2
945,887	-				+1.3
945,887	-				-1.2
945,887	-				+2.4
945,887	-				+0.1
945,887	-				-1.7
945,887	-				-1.2
945,887	-				+0.2
945,887	-				-0.3
945,887	-				+0.1
945,887	-				-1.1
945,887	-				+2.7
945,887	-				+2.3
945,887	-				-0.0
945,887	-				-1.1
945,887	-				+0.2
945,887	-				+0.6
945,887	-				-0.1
945,887	-				-0.2
945,887	-				+0.8
945,887	-				+1.7
945,887	-				-0.0
945,887	-				-0.9
945,887	-				+0.5
945,887	-				-1.0
945,887	-				+0.8
945,887	-				+2.0
945,887	-				-1.9
945,887	-				+1.1
945,887	-				-0.5
945,887	-				+2.3
945,887	-				-0.6
945,887	-				+2.0
945,910	-				+0.7
945,910	-				-0.5
945,953	+				+0.6
945,953	+				-0.7
945,953	+				-0.2
945,954	-				+1.0
945,954	-				-0.9
946,223	+		Psyr_0834	0.26	-1.9
946,223	+		Psyr_0834	0.26	-0.6
946,223	+		Psyr_0834	0.26	-0.0
946,224	-		Psyr_0834	0.26	-1.0
946,224	-		Psyr_0834	0.26	+1.2
946,224	-		Psyr_0834	0.26	-2.5
946,224	-		Psyr_0834	0.26	-0.3
946,270	-		Psyr_0834	0.32	+0.0
946,368	+		Psyr_0834	0.43	+0.3
946,368	+		Psyr_0834	0.43	-0.5
946,368	+		Psyr_0834	0.43	-1.4
946,368	+		Psyr_0834	0.43	+1.7
946,369	-		Psyr_0834	0.43	+0.4
946,458	+		Psyr_0834	0.53	+0.0
946,534	-		Psyr_0834	0.61	+0.7
946,538	-		Psyr_0834	0.62	-0.4
946,538	-		Psyr_0834	0.62	+1.7
946,581	+		Psyr_0834	0.67	+1.2
946,718	+		Psyr_0834	0.82	+0.4