Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4669 and Psyr_4670 are separated by 135 nucleotides Psyr_4670 and Psyr_4671 are separated by 88 nucleotides
Psyr_4669: Psyr_4669 - pyrroloquinoline quinone synthesis related protease (pqqF), Metallo peptidase, MEROPS family M16A, at 5,534,830 to 5,537,118
_4669
Psyr_4670: Psyr_4670 - coenzyme PQQ synthesis protein A, at 5,537,254 to 5,537,328
_4670
Psyr_4671: Psyr_4671 - coenzyme PQQ synthesis protein B, at 5,537,417 to 5,538,328
_4671
Position (kb) 5534
5535
5536
5537
5538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5533.839 kb on - strand at 5533.839 kb on - strand at 5534.739 kb on + strand at 5534.740 kb on - strand at 5534.740 kb on - strand at 5535.335 kb on - strand, within Psyr_4669 at 5535.397 kb on + strand, within Psyr_4669 at 5535.398 kb on - strand, within Psyr_4669 at 5535.398 kb on - strand, within Psyr_4669 at 5535.712 kb on + strand, within Psyr_4669 at 5535.713 kb on - strand, within Psyr_4669 at 5536.081 kb on + strand, within Psyr_4669 at 5536.082 kb on - strand, within Psyr_4669 at 5536.082 kb on - strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.217 kb on + strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.218 kb on - strand, within Psyr_4669 at 5536.392 kb on - strand, within Psyr_4669 at 5536.676 kb on - strand, within Psyr_4669 at 5536.676 kb on - strand, within Psyr_4669 at 5536.839 kb on - strand, within Psyr_4669 at 5537.116 kb on + strand at 5537.139 kb on - strand at 5537.164 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.177 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.238 kb on - strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.266 kb on - strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.370 kb on + strand at 5537.370 kb on + strand at 5537.371 kb on - strand at 5537.390 kb on - strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.434 kb on - strand at 5537.434 kb on - strand at 5537.434 kb on - strand at 5537.746 kb on + strand, within Psyr_4671 at 5537.956 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,533,839 - -0.6 5,533,839 - -1.6 5,534,739 + +0.8 5,534,740 - -0.4 5,534,740 - +0.6 5,535,335 - Psyr_4669 0.22 +0.3 5,535,397 + Psyr_4669 0.25 -1.0 5,535,398 - Psyr_4669 0.25 +1.0 5,535,398 - Psyr_4669 0.25 -1.1 5,535,712 + Psyr_4669 0.39 +1.5 5,535,713 - Psyr_4669 0.39 -0.3 5,536,081 + Psyr_4669 0.55 +2.8 5,536,082 - Psyr_4669 0.55 +0.6 5,536,082 - Psyr_4669 0.55 +1.0 5,536,217 + Psyr_4669 0.61 +0.3 5,536,217 + Psyr_4669 0.61 +0.2 5,536,217 + Psyr_4669 0.61 +1.0 5,536,217 + Psyr_4669 0.61 +0.8 5,536,217 + Psyr_4669 0.61 -2.3 5,536,218 - Psyr_4669 0.61 -0.7 5,536,218 - Psyr_4669 0.61 +1.0 5,536,218 - Psyr_4669 0.61 +0.5 5,536,218 - Psyr_4669 0.61 +0.8 5,536,392 - Psyr_4669 0.68 +0.8 5,536,676 - Psyr_4669 0.81 +0.4 5,536,676 - Psyr_4669 0.81 -0.4 5,536,839 - Psyr_4669 0.88 +0.2 5,537,116 + -0.8 5,537,139 - -0.4 5,537,164 + +1.3 5,537,169 + +1.5 5,537,169 + -0.2 5,537,169 + +0.0 5,537,169 + +0.3 5,537,169 + -0.2 5,537,169 + +1.8 5,537,169 + -1.2 5,537,169 + -1.7 5,537,169 + -0.4 5,537,169 + -0.6 5,537,169 + +0.4 5,537,169 + -1.5 5,537,169 + +0.1 5,537,169 + -0.5 5,537,169 + -0.4 5,537,169 + +1.8 5,537,169 + +2.0 5,537,170 - -1.6 5,537,170 - +0.7 5,537,170 - +0.5 5,537,170 - -0.4 5,537,170 - +1.0 5,537,170 - +0.3 5,537,170 - -0.8 5,537,170 - -0.3 5,537,170 - +0.3 5,537,170 - -0.2 5,537,177 + +3.2 5,537,191 + +0.8 5,537,191 + -0.4 5,537,191 + -1.4 5,537,191 + -0.1 5,537,191 + -0.7 5,537,191 + -0.1 5,537,191 + +1.4 5,537,192 - +0.8 5,537,192 - -1.0 5,537,192 - +0.5 5,537,192 - +0.4 5,537,192 - -0.2 5,537,192 - +0.2 5,537,192 - -0.6 5,537,192 - -0.3 5,537,192 - +0.3 5,537,192 - -0.7 5,537,210 + +1.2 5,537,210 + +1.0 5,537,210 + -1.4 5,537,210 + -0.6 5,537,210 + +0.8 5,537,211 - +0.2 5,537,211 - +0.7 5,537,211 - -0.6 5,537,217 + +0.4 5,537,217 + -0.0 5,537,217 + -0.2 5,537,217 + -0.1 5,537,217 + -0.4 5,537,217 + -1.2 5,537,218 - -0.4 5,537,218 - -0.6 5,537,218 - +0.8 5,537,218 - -0.2 5,537,218 - -0.4 5,537,218 - +1.3 5,537,218 - -2.6 5,537,218 - +0.0 5,537,218 - +0.1 5,537,218 - +0.9 5,537,218 - +0.0 5,537,218 - -0.5 5,537,238 - +0.6 5,537,254 - -0.9 5,537,254 - +0.0 5,537,254 - -0.0 5,537,266 - Psyr_4670 0.16 +0.3 5,537,275 + Psyr_4670 0.28 -0.3 5,537,275 + Psyr_4670 0.28 -3.0 5,537,275 + Psyr_4670 0.28 +0.3 5,537,275 + Psyr_4670 0.28 +2.0 5,537,276 - Psyr_4670 0.29 +0.3 5,537,276 - Psyr_4670 0.29 +0.2 5,537,276 - Psyr_4670 0.29 +0.8 5,537,276 - Psyr_4670 0.29 -1.3 5,537,311 + Psyr_4670 0.76 +0.8 5,537,311 + Psyr_4670 0.76 +1.1 5,537,311 + Psyr_4670 0.76 -0.5 5,537,311 + Psyr_4670 0.76 -0.7 5,537,311 + Psyr_4670 0.76 -0.6 5,537,311 + Psyr_4670 0.76 -1.9 5,537,311 + Psyr_4670 0.76 -1.0 5,537,311 + Psyr_4670 0.76 -0.3 5,537,312 - Psyr_4670 0.77 -2.2 5,537,312 - Psyr_4670 0.77 -1.3 5,537,312 - Psyr_4670 0.77 +0.1 5,537,370 + -1.1 5,537,370 + -0.2 5,537,371 - -0.1 5,537,390 - -0.4 5,537,420 + -0.7 5,537,420 + +0.3 5,537,420 + -0.6 5,537,420 + +0.0 5,537,420 + -0.4 5,537,420 + -0.7 5,537,420 + -0.0 5,537,420 + +0.8 5,537,420 + -1.5 5,537,420 + -0.0 5,537,421 - +0.0 5,537,421 - -1.1 5,537,421 - -0.4 5,537,421 - +0.2 5,537,421 - -0.8 5,537,421 - -0.0 5,537,421 - -0.0 5,537,421 - -0.5 5,537,421 - -0.4 5,537,421 - -1.0 5,537,421 - +1.6 5,537,421 - +0.1 5,537,421 - -1.1 5,537,421 - -1.6 5,537,421 - +0.4 5,537,421 - -1.4 5,537,421 - -0.6 5,537,433 + +0.3 5,537,433 + +0.5 5,537,434 - +0.2 5,537,434 - -0.1 5,537,434 - -0.4 5,537,746 + Psyr_4671 0.36 -0.5 5,537,956 + Psyr_4671 0.59 +0.4 5,538,002 + Psyr_4671 0.64 -0.1 5,538,003 - Psyr_4671 0.64 -0.0 5,538,003 - Psyr_4671 0.64 +1.1
Or see this region's nucleotide sequence